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Adjusted meta

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This commit is contained in:
Nicolas Vannieuwkerke 2022-05-10 13:33:37 +02:00
parent b7134855e4
commit fa7c947c35
2 changed files with 10 additions and 10 deletions
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4
modules/rtgtools/vcfeval/main.nf
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@ -20,10 +20,10 @@ process RTGTOOLS_VCFEVAL {
tuple val(meta), path("**fn.vcf.gz"), path("**fn.vcf.gz.tbi") , emit: fn tuple val(meta), path("**fn.vcf.gz"), path("**fn.vcf.gz.tbi") , emit: fn
tuple val(meta), path("**fp.vcf.gz"), path("**fp.vcf.gz.tbi") , emit: fp tuple val(meta), path("**fp.vcf.gz"), path("**fp.vcf.gz.tbi") , emit: fp
tuple val(meta), path("**baseline.vcf.gz"), path("**baseline.vcf.gz.tbi") , emit: baseline tuple val(meta), path("**baseline.vcf.gz"), path("**baseline.vcf.gz.tbi") , emit: baseline
tuple val(meta), path("**.tsv.gz") , emit: roc tuple val(meta), path("**.tsv.gz") , emit: roc
tuple val(meta), path("**results/summary.txt") , emit: summary tuple val(meta), path("**results/summary.txt") , emit: summary
tuple val(meta), path("**results/phasing.txt") , emit: phasing tuple val(meta), path("**results/phasing.txt") , emit: phasing
path "versions.yml" , emit: versions path "versions.yml" , emit: versions
when: when:
task.ext.when == null || task.ext.when task.ext.when == null || task.ext.when

16
modules/rtgtools/vcfeval/meta.yml
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@ -62,21 +62,21 @@ output:
type: file type: file
description: Files containing logging from vcfeval description: Files containing logging from vcfeval
pattern: "*{done,progress,.log}" pattern: "*{done,progress,.log}"
- true_positives: - tp:
type: file type: file
description: VCF files containing true positives with their index files description: A tuple containing the VCF and TBI file for the true positive variants
pattern: "tp.vcf{.gz,.gz.tbi}" pattern: "tp.vcf{.gz,.gz.tbi}"
- true_positives_baseline: - baseline:
type: file type: file
description: VCF files containing baseline true positives with their index files description: A tuple containing the VCF and TBI file for the baseline true positive variants
pattern: "tp-baseline.vcf{.gz,.gz.tbi}" pattern: "tp-baseline.vcf{.gz,.gz.tbi}"
- false_positives: - fp:
type: file type: file
description: VCF files containing false positives with their index files description: A tuple containing the VCF and TBI file for the false positive variants
pattern: "fp.vcf{.gz,.gz.tbi}" pattern: "fp.vcf{.gz,.gz.tbi}"
- false_negatives: - fn:
type: file type: file
description: VCF files containing false negatives with their index files description: A tuple containing the VCF and TBI file for the false negative variants
pattern: "fn.vcf{.gz,.gz.tbi}" pattern: "fn.vcf{.gz,.gz.tbi}"
- roc: - roc:
type: file type: file