millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-22 19:18:17 +00:00
Code Issues Releases Packages Activity

Merge pull request #1716 from asp8200/get_tbi_files_from_gatk4_mergevcfs

Browse source 
Get tbi-files from gatk4 mergevcfs
This commit is contained in:
FriederikeHanssen 2022-05-31 17:55:06 +02:00 committed by GitHub
commit fba7edb652
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
3 changed files with 8 additions and 0 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

1
modules/gatk4/mergevcfs/main.nf
View file

@ -13,6 +13,7 @@ process GATK4_MERGEVCFS {
output: output:
tuple val(meta), path('*.vcf.gz'), emit: vcf tuple val(meta), path('*.vcf.gz'), emit: vcf
tuple val(meta), path("*.tbi") , emit: tbi
path "versions.yml" , emit: versions path "versions.yml" , emit: versions
when: when:

5
modules/gatk4/mergevcfs/meta.yml
View file

@ -35,6 +35,11 @@ output:
type: file type: file
description: merged vcf file description: merged vcf file
pattern: "*.vcf.gz" pattern: "*.vcf.gz"
- tbi:
type: file
description: index files for the merged vcf files
pattern: "*.tbi"
- versions: - versions:
type: file type: file
description: File containing software versions description: File containing software versions

2
tests/modules/gatk4/mergevcfs/test.yml
View file

@ -6,6 +6,8 @@
files: files:
- path: output/gatk4/test.vcf.gz - path: output/gatk4/test.vcf.gz
md5sum: 5b289bda88d3a3504f2e19ee8cff177c md5sum: 5b289bda88d3a3504f2e19ee8cff177c
- path: output/gatk4/test.vcf.gz.tbi
md5sum: a81673763b13086cfce9a23e72a35a16
- path: output/gatk4/versions.yml - path: output/gatk4/versions.yml
- name: gatk4 mergevcfs test_gatk4_mergevcfs_no_dict - name: gatk4 mergevcfs test_gatk4_mergevcfs_no_dict