diff --git a/tools/umi_tools/main.nf b/tools/umi_tools/main.nf index c942d9af..f6ced000 100644 --- a/tools/umi_tools/main.nf +++ b/tools/umi_tools/main.nf @@ -33,7 +33,7 @@ process umitools_dedup { } // Contruct CL line - internal_cl = "${internal_prog} ${internal_args} -I $bam -S ${sample_id}.dedup.bam --output-stats=${sample_id}" + command = "${internal_prog} ${internal_args} -I $bam -S ${sample_id}.dedup.bam --output-stats=${sample_id}" // Log if (params.verbose){