From fc8bc4675ddfb6dd50e186051790abcd7e000164 Mon Sep 17 00:00:00 2001
From: Chris Cheshire <chris.j.cheshire@gmail.com>
Date: Tue, 23 Jun 2020 09:34:57 +0100
Subject: [PATCH] review-correction | Variable name change

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
---
 tools/umi_tools/main.nf | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tools/umi_tools/main.nf b/tools/umi_tools/main.nf
index c942d9af..f6ced000 100644
--- a/tools/umi_tools/main.nf
+++ b/tools/umi_tools/main.nf
@@ -33,7 +33,7 @@ process umitools_dedup {
     }
 
     // Contruct CL line
-    internal_cl = "${internal_prog} ${internal_args} -I $bam -S ${sample_id}.dedup.bam --output-stats=${sample_id}"
+    command = "${internal_prog} ${internal_args} -I $bam -S ${sample_id}.dedup.bam --output-stats=${sample_id}"
 
     // Log
     if (params.verbose){