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Merge pull request #1650 from nvnieuwk/update-module-rtgtools/vcfeval
Added memory allocation to VCFeval
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commit
fc987d5fcd
1 changed files with 2 additions and 1 deletions
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@ -35,12 +35,13 @@ process RTGTOOLS_VCFEVAL {
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def eval_regions = evaluation_regions ? "--evaluation-regions=$evaluation_regions" : ""
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def truth_index = truth_vcf_tbi ? "" : "rtg index $truth_vcf"
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def query_index = query_vcf_tbi ? "" : "rtg index $query_vcf"
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def avail_mem = task.memory.toGiga() + "G"
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"""
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$truth_index
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$query_index
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rtg vcfeval \\
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rtg RTG_MEM=$avail_mem vcfeval \\
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$args \\
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--baseline=$truth_vcf \\
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$bed_regions \\
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