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update version also for spark containers
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parent
169b2b96c1
commit
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2 changed files with 6 additions and 6 deletions
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@ -2,10 +2,10 @@ process GATK4_BASERECALIBRATOR_SPARK {
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tag "$meta.id"
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label 'process_low'
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conda (params.enable_conda ? "bioconda::gatk4=4.2.3.0" : null)
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conda (params.enable_conda ? "bioconda::gatk4=4.2.6.1" : null)
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container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
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'https://depot.galaxyproject.org/singularity/gatk4:4.2.3.0--hdfd78af_0' :
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'broadinstitute/gatk:4.2.3.0' }"
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'https://depot.galaxyproject.org/singularity/gatk4:4.2.6.1--hdfd78af_0':
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'quay.io/biocontainers/gatk4:4.2.6.1--hdfd78af_0' }"
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input:
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tuple val(meta), path(input), path(input_index), path(intervals)
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@ -2,10 +2,10 @@ process GATK4_MARKDUPLICATES_SPARK {
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tag "$meta.id"
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label 'process_high'
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conda (params.enable_conda ? "bioconda::gatk4=4.2.3.0" : null)
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conda (params.enable_conda ? "bioconda::gatk4=4.2.6.1" : null)
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container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
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'https://depot.galaxyproject.org/singularity/gatk4:4.2.3.0--hdfd78af_0' :
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'broadinstitute/gatk:4.2.3.0' }"
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'https://depot.galaxyproject.org/singularity/gatk4:4.2.6.1--hdfd78af_0':
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'quay.io/biocontainers/gatk4:4.2.6.1--hdfd78af_0' }"
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input:
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tuple val(meta), path(bam)
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