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fix output glob

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This commit is contained in:
Matthias De Smet 2022-04-22 12:36:32 +02:00
parent 2f6382168c
commit fefffb9bb0
2 changed files with 4 additions and 4 deletions
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6
modules/elprep/merge/main.nf
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@ -11,8 +11,8 @@ process ELPREP_MERGE {
tuple val(meta), path(bam) tuple val(meta), path(bam)
output: output:
tuple val(meta), path("**.{bam,sam}") , emit: bam tuple val(meta), path("output/**.{bam,sam}") , emit: bam
path "versions.yml" , emit: versions path "versions.yml" , emit: versions
when: when:
task.ext.when == null || task.ext.when task.ext.when == null || task.ext.when
@ -30,7 +30,7 @@ process ELPREP_MERGE {
elprep merge \\ elprep merge \\
input \\ input \\
${prefix}.${suffix} \\ output/${prefix}.${suffix} \\
$args \\ $args \\
${single_end} \\ ${single_end} \\
--nr-of-threads $task.cpus --nr-of-threads $task.cpus

2
tests/modules/elprep/merge/test.yml
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@ -4,5 +4,5 @@
- elprep - elprep
- elprep/merge - elprep/merge
files: files:
- path: output/elprep/test.bam - path: output/elprep/output/test.bam
- path: output/elprep/versions.yml - path: output/elprep/versions.yml