From ff4b297827d3a78ea66172241a4ed414ea1148da Mon Sep 17 00:00:00 2001
From: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
Date: Wed, 11 May 2022 13:57:11 +0200
Subject: [PATCH] Update modules/bowtie2/align/main.nf

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
---
 modules/bowtie2/align/main.nf | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/modules/bowtie2/align/main.nf b/modules/bowtie2/align/main.nf
index 605aae34..8ee198bb 100644
--- a/modules/bowtie2/align/main.nf
+++ b/modules/bowtie2/align/main.nf
@@ -48,7 +48,7 @@ process BOWTIE2_ALIGN {
         -x \$INDEX \\
         ${reads_args} \\
         --threads $task.cpus \\
-        ${unaligned} \\
+        $unaligned \\
         $args \\
         2> ${prefix}.bowtie2.log \\
         | ${samtools}