3 commits

Author	SHA1	Message	Date
James A. Fellows Yates	daab0a77dd	Add HAMRONIZATION/FARGENE and updates all HARMONIZATION tools to 1.1.1 (#2107) ... * Update main.nf * Update meta.yml * Re-add logos as not staged in a way that works with MultiQC config files * Update main.nf * Remove now unnecessary input channel * Remove unused channel from tests * Update hAMRonization to 1.1.1 and add hAMRonization farGene * Fix hamronizatio ntests * Prettier * Fix fargene linting * Correct file * Fix fargene output * Apply suggestions from code review Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com> * Fix summarise tests * Prettier Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com>	2022-09-27 15:32:18 +02:00
James A. Fellows Yates	90aef30f43	Set process label to process_single for modules with no task.cpus usage (#2076) ... * Set process label to `process_single` for modules with no `task.cpus` usage * Fix tests of 'borked' modules * prettier * More modules are single-threaded and can use process_single * Adding process_single to hmmer/esl* modules * Fix failing tests * Prettier Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk> Co-authored-by: Daniel Lundin <erik.rikard.daniel@gmail.com>	2022-09-19 11:54:47 +02:00
James A. Fellows Yates	61c88c6233	Add hamronization/summarize (#1366) ... * fix: remove left-over unnecessary code * Add hamronizer/deeparg * Add hamronisation/summarise * Update test.yml * Update modules/hamronization/summarize/meta.yml Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com> * line up outputs Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com> Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com>	2022-03-03 08:02:04 +01:00