Commit graph

4 commits

Author SHA1 Message Date
Harshil Patel
84f02a08a5 Update umitools/dedup module to make --output-stats optional 2022-05-23 22:31:09 +01:00
Harshil Patel
f425aa3cea
Add outputs for umitools dedup summary stats (#1422) 2022-03-18 20:21:41 +00:00
Matthias Hörtenhuber
e745e167c1
Fix formatting in yaml files, add yamllint config (#1279)
* fix yml formatting

* allow fastq.gz and fq.gz as file input, add meta.yml and test

* fix yaml files

* Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test"

This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4.

* prettier magic!

* fix comments for yamllint

* remove node version number

* fix linting errors

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2022-02-15 11:15:27 +00:00
Kevin
81ed0e0ff2
added meta.yml for umitools (#860)
* added meta.yml for umitools

* Update modules/umitools/dedup/meta.yml

type: list --> type: file

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* Update modules/umitools/dedup/meta.yml

aww thanks @drpateh :D

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* Update modules/umitools/dedup/meta.yml

module can only handle one BAM at a time, ergo

BAM files --> BAM file

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* Update meta.yml

added `pattern` for input `bam` and `bai`

* removed trailing whitespace to appease linter

* added license to new meta.yml files

* Apply suggestions from code review

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-10-23 17:30:10 +01:00