nf-core_modules

1662 commits 30 branches 0 tags 142 MiB

Author	SHA1	Message	Date
praveenraj2018	43a1c1c6d1	Update in GATK4 variantfiltration: Added vcf_index to vcf tuple; output to vcf.gz format. (#1083 ) * Added vcf_index to vcf tuple; output to vcf.gz format. * Fix: extra new line in meta.yml. * addressed review feedback * fix: editorconfig error * fix: gatk memory flag * fix: editorconfig error * fix: Indentation fix: Indentation * Fix: lint editorconfig error Removed one extra space Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com>	2021-11-18 21:47:40 +01:00
Maxime U. Garcia	3b600af50e	feat: update gatk4 from 4.2.0.0 to 4.2.3.0 (#1059 ) * feat: update gatk4 from 4.2.0.0 to 4.2.3.0 * update md5checksum * commit all files * actually checksum was good, but I suspect something fishy with the tests	2021-11-11 08:58:59 +01:00
Harshil Patel	7b3315591a	Remove def software lines and emit versions channel as plural (#780 ) * Remove def software line * Replace version with versions in emit statement * Fix default software names	2021-10-01 14:04:56 +01:00
Harshil Patel	43c2779258	Fix version commands (#749 ) * Fix version commands * Fix version commands: again	2021-09-27 22:10:37 +01:00
Gregor Sturm	906577873b	Bulk update modules to use versions.yml (#739 ) * New functions.nf * Convert code to create versions.yml * Update meta.yml * update output channel * Fix more meta.yml * Manually update remaining modules * remove superflous echo * Fix misformatted meta.yml files * Fix yaml, was list instead of dict * fix version for bcftools Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-09-27 09:41:24 +01:00
Harshil Patel	e937c7950a	Rename software/ directory to modules/ to re-organise module structure (#567 ) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml	2021-07-07 10:10:18 +01:00

Renamed from software/gatk4/variantfiltration/main.nf (Browse further)

6 commits