1005 commits

Author	SHA1	Message	Date
Johnathan D	0b40798d1b	fix: lofreq/callparallel missing arg (#562) (#586) ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-07-19 09:19:27 +01:00
Johnathan D	8c294882d7	fix: lofreq/call test.yml md5sum (#587)	2021-07-19 08:53:27 +01:00
Maxime U. Garcia	adfb8a3d65	fix: update samtools_merge (#582) ... * fix: update samtools_merge * Update modules/samtools/merge/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-07-16 14:32:17 +02:00
Maxime U. Garcia	b3c4667732	fix: update to gatk4.2.0.0 (#575) ... * fix: update to gatk4.2.0.0 * fix: update md5sum	2021-07-16 11:26:28 +02:00
Harshil Patel	e937c7950a	Rename software/ directory to modules/ to re-organise module structure (#567) ... * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml	2021-07-07 10:10:18 +01:00