SusiJo
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f6953b5147
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adjust cnvkit/batch for germline mode
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2022-06-01 17:35:02 +02:00 |
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James A. Fellows Yates
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5a94794793
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Merge branch 'master' into r-ampir
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2022-06-01 09:18:54 +02:00 |
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James Fellows Yates
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c1ac3fbb59
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Skeleton
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2022-05-31 20:13:48 +02:00 |
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Nicolas Vannieuwkerke
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80366924fd
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added gatk4/composestrtablefile
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2022-05-31 16:08:13 +02:00 |
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James Fellows Yates
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7ffe98ac8b
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Add gatk/indelrealigner
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2022-05-30 21:12:21 +02:00 |
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jtangrot
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1c99ffd876
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Add vserach usearch_global
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2022-05-30 08:50:27 +02:00 |
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Sateesh Peri
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ead3679829
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Merge branch 'master' into rp3-add-snippy
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2022-05-26 03:04:19 -04:00 |
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jasmezz
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77b5986463
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Create ampir module
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2022-05-25 13:27:10 +02:00 |
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Jill V. Hagey, PhD
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b1dd1d8a52
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Merge branch 'nf-core:master' into gamma-update
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2022-05-24 19:28:06 -04:00 |
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jvhagey
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bb999395aa
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fixed pytest_modules.yml
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2022-05-24 19:19:38 -04:00 |
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Mahesh Binzer-Panchal
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3d51956b88
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Merge branch 'master' into kat_hist
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2022-05-24 23:10:13 +02:00 |
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Thiseas C. Lamnidis
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6d04395c3c
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Merge branch 'master' into sexdeterrmine
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2022-05-24 13:17:37 +02:00 |
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Mahesh Binzer-Panchal
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afb5f226e6
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Merge branch 'master' into kat_hist
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2022-05-24 13:06:31 +02:00 |
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Ramprasad Neethiraj
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b4982ff6e3
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Merge branch 'master' into rhocall
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2022-05-24 09:41:30 +02:00 |
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SusiJo
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50128b0c86
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Merge branch 'master' into cnvkit_reference
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2022-05-24 07:49:44 +02:00 |
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SusiJo
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8fec7ae321
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added new testdata path
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2022-05-23 19:01:46 +02:00 |
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SusiJo
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bbee9e3c3b
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add new module cnvkit/reference
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2022-05-23 18:35:50 +02:00 |
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Thiseas Christos Lamnidis
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37c6fb8fed
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Merge remote-tracking branch 'upstream/master' into sexdeterrmine
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2022-05-23 17:30:21 +02:00 |
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Thiseas Christos Lamnidis
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96260ced83
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Add test data to config
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2022-05-23 17:15:57 +02:00 |
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SusiJo
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5d5eacee63
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Merge branch 'nf-core:master' into cnvkit/antitarget
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2022-05-23 16:52:33 +02:00 |
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SusiJo
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4f9d672e55
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added new module cnvkit/antitarget
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2022-05-23 16:52:06 +02:00 |
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FriederikeHanssen
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754afa9ff3
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Merge branch 'master' into gatk_filter
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2022-05-23 15:37:44 +02:00 |
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Ramprasad Neethiraj
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9fb327fec7
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Merge branch 'master' of https://github.com/nf-core/modules into rhocall
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2022-05-23 13:06:00 +02:00 |
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Mahesh Binzer-Panchal
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e06fb752c3
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Merge branch 'master' into kat_hist
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2022-05-23 08:52:13 +02:00 |
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Rike
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520dd06ca3
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add new testdata
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2022-05-22 13:25:39 +02:00 |
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Ramprasad Neethiraj
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2542c9d176
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add tests
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2022-05-20 16:46:19 +02:00 |
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Mahesh Binzer-Panchal
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2926ec0abb
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Add mash screen
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2022-05-20 13:23:11 +00:00 |
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Ramprasad Neethiraj
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c70b169f61
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create modules
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2022-05-20 13:34:54 +02:00 |
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Rike
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bb3e64647b
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Merge remote-tracking branch 'origin/master' into gatk_filter
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2022-05-18 15:52:47 +02:00 |
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FriederikeHanssen
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44e9cf56fa
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Merge branch 'master' into gatk_cnnscore
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2022-05-18 15:32:36 +02:00 |
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Rike
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e8221cf98e
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Merge remote-tracking branch 'origin' into gatk_cnnscore
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2022-05-18 14:27:25 +02:00 |
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James A. Fellows Yates
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965fabdd54
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Merge branch 'master' into motus_profile
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2022-05-18 11:25:48 +01:00 |
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Rike
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15fba1dd7c
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add filter variant tranches
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2022-05-17 23:01:24 +02:00 |
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Rike
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05611cf27c
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update pytest
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2022-05-17 19:11:05 +02:00 |
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Jose Espinosa-Carrasco
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3614c19206
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Merge branch 'master' into biobambam/bammerge
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2022-05-17 15:07:37 +02:00 |
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Nicolas Vannieuwkerke
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6342f5b099
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added bedtools split
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2022-05-17 14:24:32 +02:00 |
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Matthias De Smet
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d3ddc2221a
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Merge branch 'master' into biobambam/bammerge
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2022-05-17 08:26:28 +02:00 |
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Subazini TK
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79c2c529fc
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Merge branch 'master' into hmtnote
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2022-05-17 08:05:47 +02:00 |
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JIANHONG OU
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671bacb6df
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Merge branch 'master' into motus_profile
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2022-05-16 17:34:49 -04:00 |
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Matthias De Smet
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d0db186e84
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Merge branch 'master' into biobambam/bammerge
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2022-05-16 20:52:48 +02:00 |
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sysbiocoder
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fe009b738a
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modified: tests/config/pytest_modules.yml
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2022-05-16 15:20:15 +00:00 |
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Matthias De Smet
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af69ea749d
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add module: biobambam/bammerge
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2022-05-16 14:39:58 +02:00 |
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Veit Schwämmle
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74a1c1400e
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Merge branch 'master' into maxquant
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2022-05-16 13:26:35 +02:00 |
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Jasmin F
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adcfae6cd4
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Merge branch 'master' into antismashlite
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2022-05-16 10:38:01 +02:00 |
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Taniguti
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ac7fe89a78
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Merge branch 'master' into haplocheck
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2022-05-13 11:24:10 -03:00 |
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JIANHONG OU
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fadb83cf44
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Merge branch 'master' into motus_profile
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2022-05-13 09:30:20 -04:00 |
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nvnieuwk
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1d4862ba60
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Merge branch 'master' into new-module-gatk4/splitintervals
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2022-05-13 13:47:20 +02:00 |
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Nicolas Vannieuwkerke
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8a17b6dd0e
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added gatk4/splitintervals
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2022-05-13 13:46:34 +02:00 |
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Taniguti
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4728b2bcd2
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Merge branch 'master' into haplocheck
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2022-05-13 07:49:55 -03:00 |
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Lucas Taniguti
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c1ed4e21be
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tests: add haplocheck tests
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2022-05-13 07:42:34 -03:00 |
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Mahesh Binzer-Panchal
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00826dc2e9
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Merge branch 'master' into genomescope2
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2022-05-13 11:28:47 +02:00 |
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Mahesh Binzer-Panchal
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308ab8801d
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Merge branch 'master' into kat_hist
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2022-05-12 16:52:05 +02:00 |
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James A. Fellows Yates
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3c02e6056c
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Merge branch 'master' into antismashlite
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2022-05-12 14:53:52 +02:00 |
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Robert A. Petit III
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8b6e1aff38
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Merge branch 'master' into rp3-add-snippy
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2022-05-11 12:28:27 -06:00 |
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Moritz E. Beber
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b2dbaa9930
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refactor: rename module
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2022-05-11 17:33:45 +02:00 |
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Moritz E. Beber
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64ff23f3c1
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feat: add module that verifies NCBI settings
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2022-05-11 17:33:45 +02:00 |
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Mahesh Binzer-Panchal
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0199d0efd2
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Merge branch 'master' into kat_hist
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2022-05-11 16:56:29 +02:00 |
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Mahesh Binzer-Panchal
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fbe2f85e7b
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Fix path
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2022-05-11 13:53:38 +00:00 |
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Mahesh Binzer-Panchal
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fd579ebbb3
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Merge branch 'master' into kat_hist
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2022-05-11 12:43:11 +02:00 |
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Mahesh Binzer-Panchal
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00fcdd0cba
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Merge branch 'master' into genomescope2
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2022-05-11 12:42:39 +02:00 |
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Harshil Patel
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7be7f404d5
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Merge branch 'master' into refactor-prefetch
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2022-05-11 11:28:02 +01:00 |
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Jasmin F
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9cce4a00b2
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Merge branch 'nf-core:master' into antismashlite
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2022-05-11 12:03:30 +02:00 |
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Mahesh Binzer-Panchal
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0774704038
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Merge branch 'master' into genomescope2
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2022-05-11 11:38:36 +02:00 |
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Robert A. Petit III
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44e13ae439
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add module for snippy
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2022-05-10 21:31:43 +00:00 |
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Mahesh Binzer-Panchal
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b875cfb744
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Merge branch 'master' into kat_hist
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2022-05-10 14:36:18 +02:00 |
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Moritz E. Beber
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a303904eb0
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chore: add settings file to test data config
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2022-05-10 12:19:25 +02:00 |
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nvnieuwk
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95103fbd79
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Merge branch 'master' into new-module-rtg/vcfeval
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2022-05-10 09:06:34 +02:00 |
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Mahesh Binzer-Panchal
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f65d896f57
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create genomescope2 module
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2022-05-09 15:09:15 +00:00 |
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Mahesh Binzer-Panchal
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705ad7c3a1
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Merge branch 'master' into meryl_unionsum
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2022-05-09 16:20:01 +02:00 |
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nvnieuwk
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aceb5220cf
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Merge branch 'master' into new-module-rtg/vcfeval
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2022-05-09 16:18:00 +02:00 |
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Mahesh Binzer-Panchal
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83a266ea70
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Merge branch 'master' into meryl_unionsum
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2022-05-09 16:16:08 +02:00 |
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FriederikeHanssen
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adc4ff868c
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Merge branch 'master' into samtools_convert
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2022-05-09 16:15:24 +02:00 |
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nvnieuwk
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4b8bd9ebf9
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Merge branch 'master' into new-module-rtg/vcfeval
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2022-05-09 15:51:31 +02:00 |
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Mahesh Binzer-Panchal
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8d86988632
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Merge branch 'master' into meryl/histogram
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2022-05-09 15:39:32 +02:00 |
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Rike
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ef5f145342
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Generalize Bam2Cram do either conversion
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2022-05-09 15:22:54 +02:00 |
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Mahesh Binzer-Panchal
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0c567f5474
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Merge branch 'master' into meryl_unionsum
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2022-05-09 15:03:27 +02:00 |
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Jasmin F
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453d5b66a4
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Add Bacteroides fragilis GFF file
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2022-05-09 14:46:18 +02:00 |
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Mahesh Binzer-Panchal
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ce97c87b5d
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Merge branch 'master' into meryl_unionsum
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2022-05-09 13:51:55 +02:00 |
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Mahesh Binzer-Panchal
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7a5d5f5766
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Merge branch 'master' into kat_hist
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2022-05-09 13:18:18 +02:00 |
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Mahesh Binzer-Panchal
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129f57ccd9
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Add meryl histogram
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2022-05-09 08:50:28 +00:00 |
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Mahesh Binzer-Panchal
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ad4f8389cb
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Add meryl unionsum
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2022-05-09 08:33:21 +00:00 |
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Mahesh Binzer-Panchal
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32b0fdc9d9
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Merge branch 'master' into meryl_count
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2022-05-09 10:05:28 +02:00 |
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Matthias De Smet
|
2b91985aa0
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Merge branch 'master' into new-module-rtg/vcfeval
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2022-05-09 09:43:48 +02:00 |
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James A. Fellows Yates
|
8a83ad0518
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Merge branch 'master' into motus_profile
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2022-05-09 08:16:16 +02:00 |
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MaxUlysse
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3d428e2933
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fix spacing
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2022-05-07 15:28:40 +02:00 |
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Jose Espinosa-Carrasco
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e2acf28c8f
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Merge branch 'master' into maxulysse-patch-1
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2022-05-06 23:53:27 +02:00 |
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Matthias De Smet
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0752b82c9f
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Merge branch 'master' into update/snapaligner
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2022-05-06 18:57:37 +02:00 |
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Maxime U. Garcia
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ac217479e9
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Update tests/config/test_data.config
Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com>
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2022-05-06 18:18:32 +02:00 |
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Maxime U. Garcia
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ec7b460fa4
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add missing file
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2022-05-06 17:54:35 +02:00 |
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Mahesh Binzer-Panchal
|
67481c6d54
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Start Meryl count
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2022-05-06 15:04:04 +00:00 |
|
Mahesh Binzer-Panchal
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1e55ad987f
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Merge branch 'master' into kat_hist
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2022-05-06 16:35:51 +02:00 |
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nvnieuwk
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5153e10840
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Merge branch 'master' into new-module-rtg/vcfeval
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2022-05-06 16:19:17 +02:00 |
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Nicolas Vannieuwkerke
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8c857dee3a
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Fixed the sdf folder fetching
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2022-05-06 16:16:57 +02:00 |
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JIANHONG OU
|
c301a406dd
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Merge branch 'nf-core:master' into motus_profile
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2022-05-06 08:33:43 -04:00 |
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Nicolas Vannieuwkerke
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84b354ab6a
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Added the rtgtools/vcfeval module
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2022-05-06 14:23:40 +02:00 |
|
Matthias De Smet
|
26d2231e85
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fix linting
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2022-05-06 14:16:38 +02:00 |
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Mahesh Binzer-Panchal
|
a9f23bb477
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Merge branch 'master' into busco
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2022-05-06 13:49:01 +02:00 |
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Matthias De Smet
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09e729ad41
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added sha256sum
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2022-05-06 10:28:14 +02:00 |
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Mahesh Binzer-Panchal
|
d83281eac9
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Merge branch 'master' into kat_hist
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2022-05-06 10:02:44 +02:00 |
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Mahesh Binzer-Panchal
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9194fb845e
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Add module kat hist
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2022-05-06 07:54:10 +00:00 |
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