2 commits

Author	SHA1	Message	Date
Kevin Menden	043a7d1e3c	remove deprecated test tags (#440) ... * remove deprecated test tags * fix bowtie, gatk4/applybsqr * fix gatk4 baserecalibrator * fixed shovill * fixed yara/mapper * fixed kallistobustools/ref paths	2021-04-13 18:03:09 +01:00
Florian Wuennemann	0f53c3b96b	Added kallistobustools/ref (#408) ... * Added kallistobustools/ref. Local tests all passing with Docker. Linting passed. Test data currently in /tests/data/delete_me * Removed trailing whitespace line 29 * Moved workflow from meta to options. * Update main.nf * Forgot to remove previous testing input channel for workflow. * Apply suggestions from code review Applied changes suggested by @drpatelh Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Added gtf to meta.yml. * Apply suggestions from code review Adding @drpatelh suggested changes. Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Moved workflow to input value. Fixed tests. * Update tests/software/kallistobustools/ref/test.yml * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-04-09 09:41:41 +01:00