10 commits

Author	SHA1	Message	Date
Harshil Patel	dce27b8102	Update functions.nf to be more flexible for publishing by meta keys (#423) ... * Update functions.nf * Replace saveAs line in module main script * Add spacing for ECLint	2021-04-09 17:23:56 +01:00
Harshil Patel	7c2f10f591	Fix tabix/bgzip version command (#407)	2021-04-07 08:39:53 +01:00
Patrick Hüther	8a44258548	remove params section from meta.yml (#282)	2021-03-19 13:16:50 +01:00
Harshil Patel	3df3d671f2	Fix nf-core modules lint tests (#275) ... * Fix Conda definition bug * Add process label	2021-03-16 17:16:47 +00:00
Jose Espinosa-Carrasco	572abb00b3	Remove def from module options definition in main (#270) ... * Remove def from module options definition in main * Fix bismark_deduplicate tests * Fix bwameth_align tests * Fixing gatk4 conda tests ("=" instead of ':' in build id) * Same as previous commit (Fix gatk4 test) * Fix qualimap bamqc test (no md5 check for pngs) * Fix seqkit split2 tests. Changed to new test data * Fix samtools tests. Some were missing initOptions include * Removing TOOL SUBTOOL template module since now it is included on tools repo	2021-03-15 12:16:43 +00:00
Harshil Patel	412172cda6	Merge pull request #180 from MaxUlysse/master_tabix_bgzip ... Replace bcftools/bgzip by tabix/bgzip	2021-02-16 23:32:23 +00:00
MaxUlysse	596bb18394	fix: rename file to input and gz, plus fix tests	2021-02-17 00:28:32 +01:00
MaxUlysse	6a147b8aaa	chores: replace bcftools/bgzip by tabix/bgzip cf #179	2021-02-16 19:11:36 +01:00
MaxUlysse	edf5fa3cf6	fix: merge bcftools/tabix and htslib/tabix into tabix/tabix	2021-02-16 18:27:13 +01:00
MaxUlysse	f660324508	chores: move file	2021-02-16 18:20:43 +01:00