Commit graph

3 commits

Author SHA1 Message Date
James A. Fellows Yates
90aef30f43
Set process label to process_single for modules with no task.cpus usage (#2076)
* Set process label to `process_single` for modules with no `task.cpus` usage

* Fix tests of 'borked' modules

* prettier

* More modules are single-threaded and can use process_single

* Adding process_single to hmmer/esl* modules

* Fix failing tests

* Prettier

Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk>
Co-authored-by: Daniel Lundin <erik.rikard.daniel@gmail.com>
2022-09-19 11:54:47 +02:00
louperelo
d7d6b8222e
Deepbgc update versions.yml (#2058)
* not working yet (db not found)

* modify deeparg/download module to return db-path

* 🪄

* Prettier

* add test.yml

* much prettier

* test.yml delete md5 for pot. empty files

* adapt test.yml

* test.yml again

* Apply suggestions from code review

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>

* add deepbgc prodigal version to versions.yml

* Apply suggestions from code review

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-09-14 16:15:00 +02:00
louperelo
eae945721d
new module: deepbgc/pipeline (#2014)
* not working yet (db not found)

* modify deeparg/download module to return db-path

* 🪄

* Prettier

* add test.yml

* much prettier

* test.yml delete md5 for pot. empty files

* adapt test.yml

* test.yml again

* Apply suggestions from code review

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-09-07 14:59:01 +02:00