5 commits

Author	SHA1	Message	Date
James A. Fellows Yates	a0443e2c54	Fixes incorrectly quoted tags (#2113) ... * Update main.nf * Update meta.yml * Re-add logos as not staged in a way that works with MultiQC config files * Update main.nf * Remove now unnecessary input channel * Remove unused channel from tests * Update hAMRonization to 1.1.1 and add hAMRonization farGene * Fix hamronizatio ntests * Prettier * Fix fargene linting * Correct file * Fix fargene output * Apply suggestions from code review Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com> * Fix summarise tests * Prettier * Fix incorrect quotes in tags Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com>	2022-09-27 20:37:56 +01:00
Mahesh Binzer-Panchal	233fa70811	Update manual versioning (#1813)	2022-06-27 10:35:41 +02:00
Mahesh Binzer-Panchal	e20e57f90b	Add when: block (#1261)	2022-02-04 09:53:32 +01:00
Harshil Patel	67571c4e79	Add RSeqC tin.py module (#1174) ... * Add RSeqC tin.py module * Fix EC lint for unrelated hmmcopy module * Remove md5sum for empty file	2021-12-15 21:26:43 +00:00
Simon Pearce	ae92159762	New subtool: hmmcopy/generatemap (#1168) ... * Initial structure * Working with local singularity image * Working generateMap.pl script * Remote not working bioconda * Working generateMap with biocontainer * Lint changes * Updated hmmcopy container version to be consistent * Fix failing test * Remove path to perl * No hardpath to script * Update main.nf Moved version outside of process, add support for zipped fasta file * Revert to not allowing gzip via pipe, as perl script can't cope Co-authored-by: Simon Pearce <simon.pearce@cruk.manchester.ac.uk>	2021-12-15 16:57:42 +01:00