Harshil Patel
5e18e36895
Update and check tests are running for all modules ( #420 )
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* Fixes for PR 371
* Fix tags
* Add md5sum
* Add md5sums for stringtie
* Fix tests for modules where subtool = build
* Fix pytest_software name conflicts
* Change _ to / in test.yml tags
* Nope...that didnt work
* Fix sequenzautils/bam2seqz tests
2021-04-09 13:47:05 +01:00
Edmund Miller
a3684d9594
Lint modules ci ( #389 )
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* ci: Add modules lint step
Moved it ahead of the nextflow install so ideally it'll fail before we
bother doing any more setup
* ci: _ => /
* Update tests/config/pytest_software.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-04-08 09:10:52 +01:00
Harshil Patel
acb1a12a56
Re-organise all test data ( #354 )
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* Re-organise all test data
* Fix ECLint
* Fix ECLint agaaainn
* Now is not the time EClint
2021-03-24 09:53:41 +00:00
Yuk Kei Wan
af3bc225c0
ucsc_bed12tobigbed (previous pull request had conflicts) ( #302 )
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* Add files via upload
* Add files via upload
* Add files via upload
* Add files via upload
* Update pytest_software.yml
* Update main.nf
* fix linting error
* Delete test.yml
* Create functions.nf
* Update main.nf
* change test data
* revert to !>=20.11.0-edge
2021-03-24 04:55:49 +00:00
drpatelh
305d47fc87
Change path to tests
2021-02-03 16:44:56 +00:00
drpatelh
239cbe17ad
Fix relative paths
2021-02-03 16:20:02 +00:00
drpatelh
743ba37d4b
Update filters paths
2021-02-03 16:04:43 +00:00
drpatelh
ff23473e82
Restructure tests to run individually for each module
2021-02-03 16:02:58 +00:00
Edmund Miller
688cc05fe8
tests: Remove -profile in tests
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See ddbca7b467
2021-02-02 15:30:59 -06:00
Edmund Miller
d7a78fa127
style: Fix indent
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Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-01-15 10:28:11 -06:00
sruthipsuresh
b95bd37780
Added ucsc module
2021-01-15 10:28:11 -06:00
