4 commits

Author	SHA1	Message	Date
Matthias Hörtenhuber	e745e167c1	Fix formatting in yaml files, add yamllint config (#1279) ... * fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2022-02-15 11:15:27 +00:00
Mahesh Binzer-Panchal	e20e57f90b	Add when: block (#1261)	2022-02-04 09:53:32 +01:00
Harshil Patel	67571c4e79	Add RSeqC tin.py module (#1174) ... * Add RSeqC tin.py module * Fix EC lint for unrelated hmmcopy module * Remove md5sum for empty file	2021-12-15 21:26:43 +00:00
Simon Pearce	ae92159762	New subtool: hmmcopy/generatemap (#1168) ... * Initial structure * Working with local singularity image * Working generateMap.pl script * Remote not working bioconda * Working generateMap with biocontainer * Lint changes * Updated hmmcopy container version to be consistent * Fix failing test * Remove path to perl * No hardpath to script * Update main.nf Moved version outside of process, add support for zipped fasta file * Revert to not allowing gzip via pipe, as perl script can't cope Co-authored-by: Simon Pearce <simon.pearce@cruk.manchester.ac.uk>	2021-12-15 16:57:42 +01:00