6 commits

Author	SHA1	Message	Date
Harshil Patel	49da864287	Update versions key in meta.yml for all modules (#787)	2021-10-03 08:20:26 +01:00
Harshil Patel	7b3315591a	Remove def software lines and emit versions channel as plural (#780) ... * Remove def software line * Replace version with versions in emit statement * Fix default software names	2021-10-01 14:04:56 +01:00
Harshil Patel	43c2779258	Fix version commands (#749) ... * Fix version commands * Fix version commands: again	2021-09-27 22:10:37 +01:00
Gregor Sturm	906577873b	Bulk update modules to use versions.yml (#739) ... * New functions.nf * Convert code to create versions.yml * Update meta.yml * update output channel * Fix more meta.yml * Manually update remaining modules * remove superflous echo * Fix misformatted meta.yml files * Fix yaml, was list instead of dict * fix version for bcftools Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-09-27 09:41:24 +01:00
GCJMackenzie	3c4eaec52b	Update for mutect2: add output channel for stats file (#716) ... * added output channel for stats file, updated meta yml with description and test yml with check for stats file * Update modules/gatk4/mutect2/main.nf Co-authored-by: GCJMackenzie <gavin.mackenzie@nibsc.org> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-09-17 09:56:56 +01:00
GCJMackenzie	bd68797ffb	Mutect2 (#682) ... * mutect2 files added, first draft of module code entered * removing comment from main.nf * removing comment from main.nf * test added, commit made before editing yaml * tests added, still needs final check and info/comments added * gatk4 version changed to gatk4=4.2.0.0 * multiple sample support added, information added to module yaml file * Update meta.yml fixed linting error * add keywords to meta.yml * Corrections made to meta.yml * removed whitespace from meta.yml Co-authored-by: Gavin.Mackenzie <gavin.mackenzie@nibsc.org> Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>	2021-09-13 16:16:23 +01:00