28 commits

Author	SHA1	Message	Date
Nicolas Vannieuwkerke	96d4a31cc1	Moved the BED file to the main tuple	2022-05-03 15:31:05 +02:00
nvnieuwk	8187641280	Update modules/vardictjava/meta.yml ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-05-03 10:16:45 +02:00
nvnieuwk	11c6faf433	Update modules/vardictjava/meta.yml ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-05-03 10:16:36 +02:00
nvnieuwk	01085b3e09	Update modules/vardictjava/meta.yml ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-05-03 10:16:30 +02:00
nvnieuwk	1609dfc96d	Update modules/vardictjava/meta.yml ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-05-03 10:16:20 +02:00
nvnieuwk	3cdbdf50fc	Update modules/vardictjava/meta.yml ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-05-03 10:16:14 +02:00
nvnieuwk	2dff193b54	Update modules/vardictjava/meta.yml ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-05-03 10:15:59 +02:00
nvnieuwk	7c89af359c	Update modules/vardictjava/meta.yml ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-05-03 10:15:51 +02:00
Nicolas Vannieuwkerke	d33253513f	put the version on top of the file	2022-05-03 10:15:30 +02:00
Nicolas Vannieuwkerke	71c5d21374	ran prettier	2022-05-03 08:34:12 +02:00
Nicolas Vannieuwkerke	9a10e5beb5	Added the missing inputs in meta.yml + correct notation	2022-05-03 08:29:46 +02:00
Nicolas Vannieuwkerke	b8a59c2b17	Fixed version annotation	2022-05-03 08:20:10 +02:00
Nicolas Vannieuwkerke	4b04ca22dd	Variable name change for var2vcf conversion arguments	2022-04-28 16:38:49 +02:00
Nicolas Vannieuwkerke	d626a1dcd3	Removed a whitespace in meta.yml...	2022-04-28 15:41:43 +02:00
Nicolas Vannieuwkerke	bdff37c3d7	Added the statistical tests and conversion to vcf	2022-04-28 15:33:27 +02:00
Nicolas Vannieuwkerke	6678ad4426	Added a header to the VCF	2022-04-28 14:54:20 +02:00
Nicolas Vannieuwkerke	40e6e5273d	fix for a linting issue	2022-04-28 14:30:04 +02:00
Nicolas Vannieuwkerke	bf18604471	fix for a linting issue	2022-04-28 14:29:37 +02:00
Nicolas Vannieuwkerke	8c98a78d2a	Fixed the issue with the BED file	2022-04-28 14:07:55 +02:00
Nicolas Vannieuwkerke	45b4a61a15	Some small updates	2022-04-28 13:31:37 +02:00
Nicolas Vannieuwkerke	9df830f79d	Added the .bai and .fai files	2022-04-28 10:23:07 +02:00
Matthias De Smet	484c8f5dfa	Update meta.yml	2022-04-28 09:29:27 +02:00
Matthias De Smet	def580ddb7	Add gzip for compressed output	2022-04-28 09:28:57 +02:00
Nicolas Vannieuwkerke	db43095b1a	Split the bed file into a seperate input	2022-04-28 09:18:15 +02:00
Nicolas Vannieuwkerke	85c49a971f	Fixed an issue with wrong file order	2022-04-28 09:07:52 +02:00
Nicolas Vannieuwkerke	7956d38e61	Fixed the test on nextflow level	2022-04-27 13:18:46 +02:00
Matthias De Smet	d57664b576	cleanup TODO's	2022-04-27 11:18:58 +02:00
Nicolas Vannieuwkerke	024c992ca7	created the module	2022-04-27 11:12:58 +02:00