10 commits

Author	SHA1	Message	Date
kevinmenden	bb5c0ceca5	adding SplitNCigarReads	2021-02-19 14:59:29 +01:00
Kevin Menden	0202162b17	Merge branch 'master' into gatk4-mergevcfs	2021-02-19 14:11:30 +01:00
kevinmenden	02abe106ec	added optional reference dictionary as input	2021-02-19 14:09:32 +01:00
kevinmenden	6dcaf5ffc8	add gatk4 bedtointervallist	2021-02-19 11:26:31 +01:00
phue	5ad7c6bc51	add methyldackel/extract + tests + testdata	2021-02-17 19:18:55 +01:00
Anders Goncalves da Silva	0a6e8400ac	Add reference SC2 genome to test data	2021-02-12 11:27:12 -08:00
kevinmenden	9156becd19	changed 'covid' to 'sarscov2'	2021-01-29 12:45:21 +01:00
kevinmenden	8d4b71355e	added test data and salmon tests	2021-01-26 15:24:06 +01:00
kevinmenden	f58c1c1e9e	added star genomegenerate test	2021-01-22 14:01:59 +01:00
FelixKrueger	1c84a234ec	Adding back in all input files we had before	2020-07-15 15:12:04 +01:00