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Author SHA1 Message Date
JIANHONG OU
b2542ee079 remove the mgc in metadata for motus_profile. 2022-05-08 06:21:26 -04:00
MaxUlysse
3d428e2933 fix spacing 2022-05-07 15:28:40 +02:00
MaxUlysse
1013be2623 fix path to script 2022-05-07 15:22:52 +02:00
Jose Espinosa-Carrasco
2c5ecc87ed
Merge pull request #1628 from nf-core/maxulysse-patch-1 
add missing file
 2022-05-06 23:54:04 +02:00
Jose Espinosa-Carrasco
e2acf28c8f
Merge branch 'master' into maxulysse-patch-1 2022-05-06 23:53:27 +02:00
Harshil Patel
e36489d9e4
Merge pull request #1627 from nf-core/fix-prefetch 
Use a template to add retrying to prefetch
 2022-05-06 19:43:43 +01:00
Harshil Patel
2676f8eef4
Merge branch 'master' into fix-prefetch 2022-05-06 19:33:44 +01:00
Matthias De Smet
b6dd8d2854
Merge pull request #1622 from matthdsm/update/snapaligner 2022-05-06 19:34:09 +02:00
Matthias De Smet
0752b82c9f
Merge branch 'master' into update/snapaligner 2022-05-06 18:57:37 +02:00
Matthias De Smet
dd458e3388 fix tags 2022-05-06 18:57:17 +02:00
Maxime U. Garcia
ac217479e9
Update tests/config/test_data.config 
Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com>
 2022-05-06 18:18:32 +02:00
Maxime U. Garcia
ec7b460fa4
add missing file 2022-05-06 17:54:35 +02:00
Moritz E. Beber
ea41c753c0 fix: remove retry label 
Call gets retried by bash script
 2022-05-06 17:28:56 +02:00
Moritz E. Beber
dd1c66783a refactor: use a template to add retrying 2022-05-06 17:26:41 +02:00
Moritz E. Beber
ed09978222 chore: update build number 2022-05-06 17:26:41 +02:00
Mahesh Binzer-Panchal
67481c6d54 Start Meryl count 2022-05-06 15:04:04 +00:00
Mahesh Binzer-Panchal
1e55ad987f
Merge branch 'master' into kat_hist 2022-05-06 16:35:51 +02:00
Nicolas Vannieuwkerke
eb8688d2b8 Merge branch 'new-module-rtg/vcfeval' of github.com:nvnieuwk/modules into new-module-rtg/vcfeval 2022-05-06 16:21:35 +02:00
Nicolas Vannieuwkerke
e271410017 Removed some whitespaces 2022-05-06 16:21:32 +02:00
nvnieuwk
5153e10840
Merge branch 'master' into new-module-rtg/vcfeval 2022-05-06 16:19:17 +02:00
Nicolas Vannieuwkerke
8c857dee3a Fixed the sdf folder fetching 2022-05-06 16:16:57 +02:00
Sateesh Peri
e13d634764
Merge pull request #1239 from priyanka-surana/busco 
Busco
 2022-05-06 10:11:42 -04:00
Lucpen
8e5fda3b10
Merge branch 'master' into correcting_stubs 2022-05-06 15:37:08 +02:00
Lucpen
971a17a3ab fix datatest for stubs 2022-05-06 15:34:18 +02:00
Mahesh Binzer-Panchal
7a85760d08 remove 'auto' test 2022-05-06 13:33:27 +00:00
Lucpen
0fa36e6777 fix added correct entry workflow in test.yml 2022-05-06 15:26:34 +02:00
JIANHONG OU
9b50036e9b add test_bam and -m parameter for motus_profile 2022-05-06 08:56:42 -04:00
JIANHONG OU
c301a406dd
Merge branch 'nf-core:master' into motus_profile 2022-05-06 08:33:43 -04:00
Nicolas Vannieuwkerke
84b354ab6a Added the rtgtools/vcfeval module 2022-05-06 14:23:40 +02:00
JIANHONG OU
26d5b4da72
Update tests/modules/motus/profile/main.nf 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2022-05-06 08:19:54 -04:00
JIANHONG OU
3499314b96
Update modules/motus/profile/meta.yml 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2022-05-06 08:19:47 -04:00
Matthias De Smet
26d2231e85 fix linting 2022-05-06 14:16:38 +02:00
JIANHONG OU
4df57b03bd
Update modules/motus/profile/meta.yml 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2022-05-06 08:11:58 -04:00
JIANHONG OU
6b2f16a0f4
Update modules/motus/profile/meta.yml 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2022-05-06 08:11:39 -04:00
JIANHONG OU
baeb2bd1c1
Update modules/motus/profile/main.nf 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2022-05-06 08:11:29 -04:00
JIANHONG OU
4497eb1734
Update modules/motus/profile/main.nf 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2022-05-06 08:11:22 -04:00
Matthias De Smet
3930ba227b merge snapaligner modes into one 2022-05-06 14:10:44 +02:00
Mahesh Binzer-Panchal
9fa6b6c1fc Update meta.yml 2022-05-06 11:56:43 +00:00
Mahesh Binzer-Panchal
a9f23bb477
Merge branch 'master' into busco 2022-05-06 13:49:01 +02:00
Mahesh Binzer-Panchal
35c5828f43 Add --auto-lineage option and remove single_end 
Co-authored-by: Jill V. Hagey, PhD <jvhagey@gmail.com>
 2022-05-06 11:48:21 +00:00
Jose Espinosa-Carrasco
56e9e6b921
Merge pull request #1619 from matthdsm/modules/md5sum 
new modules : md5sum / sha256sum
 2022-05-06 12:37:49 +02:00
Jose Espinosa-Carrasco
035655e35d
Merge branch 'master' into modules/md5sum 2022-05-06 12:34:14 +02:00
Ramprasad Neethiraj
2ad7cb8a49
Merge pull request #1617 from ramprasadn/feat/update_cnvpytor 
Cnvpytor - merging calls from multiple samples
 2022-05-06 12:03:49 +02:00
Ramprasad Neethiraj
e639b1e455
Merge branch 'master' into feat/update_cnvpytor 2022-05-06 12:03:12 +02:00
Ramprasad Neethiraj
77209d0866
Merge pull request #1618 from ramprasadn/feat/update_svdb 
update svdb version
 2022-05-06 11:48:22 +02:00
Matthias De Smet
bd1b80f36e fix software definitions 2022-05-06 11:07:05 +02:00
Ramprasad Neethiraj
1ccea5ff4d remove prefix def in callcnvs 2022-05-06 10:56:58 +02:00
Mahesh Binzer-Panchal
c19e7da59d
Apply suggestions from code review 
Remove versions md5sum

Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
 2022-05-06 10:55:48 +02:00
Matthias De Smet
1c7205d683 fixed container definitions 2022-05-06 10:44:51 +02:00
Matthias De Smet
77d825e043 fix copy paste errors 2022-05-06 10:39:13 +02:00