4 commits

Author	SHA1	Message	Date
Harshil Patel	c99ab09f8d	Add kraken2 pigz multi-tool container for compressing output fastq files (#434) ... * Add kraken2 pigz multi-tool container for compressing output fastq files * Add untar to pytest config * Add untar process to kraken2 tests * Remove unneeded tags	2021-04-12 18:47:34 +02:00
Edmund Miller	a3684d9594	Lint modules ci (#389) ... * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-04-08 09:10:52 +01:00
Jose Espinosa-Carrasco	17fbdf96cb	Fix some module tests after switching to config data (#386) ... * Adding tar.gz kraken2 db to test data * Update test path files for untar module * Update test path files for kraken2/run module * Update test path files for cat/fastq module	2021-03-24 18:28:07 +00:00
Jose Espinosa-Carrasco	313241749c	Add kraken2 run module (#266) ... * Add kraken2 run module * Add kraken2 run module * Add coronavirus kraken2 db * Adding kraken2 run tests * Update software/kraken2/run/meta.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Fixing files commited by mistake * Remove params for meta.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-03-18 13:08:06 +00:00