millironx/nf-core_modules
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444 commits 30 branches 0 tags 142 MiB
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24 commits

Author SHA1 Message Date
Edmund Miller
f235732a58
ci(fastqc): Use both threads in GitHub runner 2020-11-16 13:45:00 -06:00
Edmund Miller
6d857a2584
ci(fastqc): Run pytest-workflow instead of workflow 
This will check for the actual output files and their contents not just
whether the module runs or not.
 2020-11-16 09:37:45 -06:00
drpatelh
49e37cb22c Add profile docker 2020-08-07 10:07:20 +01:00
drpatelh
7efd46b489 Add nextflow.config 2020-08-07 09:59:19 +01:00
drpatelh
fab020461b Add -with-docker 2020-08-07 09:44:16 +01:00
drpatelh
b0abd14135 Update tests 2020-08-07 09:31:27 +01:00
drpatelh
cb08a7326a Change NF version 2020-08-07 00:38:56 +01:00
drpatelh
3ec4f63fd8 Use correct link to fastqc 2020-08-05 16:28:42 +01:00
Phil Ewels
dcc4beacb1 Fix FastQC test 2020-07-17 11:26:50 +02:00
Phil Ewels
9b4634a426 Use latest edge version of NXF for FastQC test 2020-07-17 10:35:17 +02:00
Phil Ewels
e71bb92534 Workflows - trigger on change to workflow and test data too 2020-07-16 17:14:57 +02:00
Phil Ewels
aa24c8d175 Fix a bunch of stuff in GitHub Actions test workflows 2020-07-16 17:11:34 +02:00
Stephen Kelly
4957eb98e5 update GitHub actions for Fastqc 2020-07-16 08:49:08 -04:00
Stephen Kelly
61d44c34d0 update GitHub actions for Fastqc 2020-07-16 08:31:19 -04:00
Phil Ewels
31c0f617b9 Fix up cutadapt tests 2020-07-11 17:14:14 +02:00
Phil Ewels
905e842f36 Update more paths 2020-07-11 14:36:12 +02:00
Phil Ewels
93f7b26aa2 Use submodules for test data 2019-12-06 09:24:33 +01:00
Phil Ewels
51bd2c0277 Ansi log false for tests 2019-12-05 22:20:02 +01:00
Phil Ewels
ef486a908b Use empty dict instead for workflow 2019-12-05 16:09:28 +01:00
Phil Ewels
d682c6f7a8 Workflows: test everything on paths 2019-12-05 16:08:12 +01:00
Phil Ewels
a065ac3532 Actions: install nextflow 2019-12-05 16:03:00 +01:00
Phil Ewels
acc4eb0054 GitHub actions - run nextflow in a docker image 2019-12-05 15:57:32 +01:00
Phil Ewels
af766a9cc7 Added TrimGalore 2019-12-05 15:53:38 +01:00
Phil Ewels
497573fc5d Refactor GitHub actions workflows 2019-12-05 15:44:10 +01:00