Matthias Hörtenhuber
|
e745e167c1
|
Fix formatting in yaml files, add yamllint config (#1279)
* fix yml formatting
* allow fastq.gz and fq.gz as file input, add meta.yml and test
* fix yaml files
* Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test"
This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4.
* prettier magic!
* fix comments for yamllint
* remove node version number
* fix linting errors
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
|
2022-02-15 11:15:27 +00:00 |
|
Edmund Miller
|
e2ba70ed9a
|
Add Cell Ranger mkfastq, mkgtf, and count (#979)
* feat(cellranger): Add initial count module
Co-authored-by: Gisela Gabernet <gisela.gabernet@gmail.com>
* feat(cellranger): Add mkgtf module
* test(cellranger): Fix count test with mkgtf
* fix(cellranger): Generalize gtf attribute filters
* chore: Add .gitignore for cellranger tar
* build(cellranger): Update dockerfile
https://joshtronic.com/2021/09/12/fixed-repository-debian-security-buster-updates-changed-suite-from-stable-to-oldstable/
* Apply suggestions from code review
Co-authored-by: Gisela Gabernet <gisela.gabernet@gmail.com>
* Apply suggestions from code review
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Update modules/cellranger/mkgtf/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* style: Capitalize README
* test(cellranger): Update pytest_modules
* feat(cellranger): Add initial mkfastq module
* ci: Update pytest modules
* refactor(cellranger): Update modules to new syntax
* docs(cellranger): Update meta files
There is some terrible copy-pasting going on.
* fix(cellranger): Add args
Co-authored-by: Gisela Gabernet <gisela.gabernet@gmail.com>
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
|
2021-12-02 14:27:20 +00:00 |
|