4 commits

Author	SHA1	Message	Date
Charles Plessy	894349b9b5	Fix 459 (#534) ... * Update test data names. Closes: #459 Thanks: @FriederikeHanssen (`samtools` tests are already fixed by another commit) * Fix file names in tests. The update of test data name required changes in the test yml files. I also updated the `bismark/summary/main.nf` file to get its data from the `params.test_data` map.	2021-06-14 12:24:59 +01:00
Harshil Patel	acb1a12a56	Re-organise all test data (#354) ... * Re-organise all test data * Fix ECLint * Fix ECLint agaaainn * Now is not the time EClint	2021-03-24 09:53:41 +00:00
Patrick Hüther	7fe6f9fab2	bismark: remove underscores from process names (#303) ... * sanitize process names no underscores allowed * remove underscores from process names	2021-03-22 17:46:11 +01:00
Patrick Hüther	eb9178970f	add bismark/summary (#295) ... * add bismark/align module * bismark/align: add tests * bismark/align: update meta.yml * bismark/align: skip checksum for alignment logs they contain timestamps * bismark/align: restore correct checksum caused some mixup in the last commit * bismark/align: add genome_preparation to filters * Fix conda version pin * change options to be a global var * remove params from meta.yml * add bismark/summary * remove md5sum check for bismark_summary_report.html it contains a timestamp * fix tests * update meta.yml * remove mysterious index files	2021-03-22 14:58:54 +01:00