millironx/nf-core_modules
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10 commits

Author SHA1 Message Date
Jose Espinosa-Carrasco
572abb00b3
Remove def from module options definition in main (#270) 
* Remove def from module options definition in main

* Fix bismark_deduplicate tests

* Fix bwameth_align tests

* Fixing gatk4 conda tests ("=" instead of ':' in build id)

* Same as previous commit (Fix gatk4 test)

* Fix qualimap bamqc test (no md5 check for pngs)

* Fix seqkit split2 tests. Changed to new test data

* Fix samtools tests. Some were missing initOptions include

* Removing TOOL SUBTOOL template module since now it is included on tools repo
 2021-03-15 12:16:43 +00:00
FriederikeHanssen
bf58948dad remove todos, describe in/output 2021-02-23 15:41:11 +01:00
FriederikeHanssen
4e9d728108 allow fq.gz or gastq.gz as in/output 2021-02-23 15:40:22 +01:00
FriederikeHanssen
12137d6f3e Remove trialing whitespace 2021-02-23 15:00:21 +01:00
FriederikeHanssen
e251a3bed5 Remove todos 2021-02-23 14:58:09 +01:00
FriederikeHanssen
13733b2581 Add beautiful md5sums 2021-02-23 14:57:07 +01:00
FriederikeHanssen
5e365d5eff Make all these tests pass 2021-02-23 14:09:46 +01:00
FriederikeHanssen
25a2a16f2d Try to make a single test pass 2021-02-23 13:34:50 +01:00
FriederikeHanssen
2654c52ed1 Use list of reads as input, similar to dedup/extract 2021-02-17 17:15:02 +01:00
FriederikeHanssen
bedc2972eb Add seqkit split2 2021-02-17 17:09:24 +01:00