2 commits

Author	SHA1	Message	Date
Maxime U. Garcia	3b600af50e	feat: update gatk4 from 4.2.0.0 to 4.2.3.0 (#1059) ... * feat: update gatk4 from 4.2.0.0 to 4.2.3.0 * update md5checksum * commit all files * actually checksum was good, but I suspect something fishy with the tests	2021-11-11 08:58:59 +01:00
GCJMackenzie	aa32a8a72e	new module: gatk4/calculatecontamination (#778) ... * initiated files for calculate contamination * pushing local repo to remote * created script, filled in meta yml, created tests and test yml. local checks passing, needs repo side test data * added option and tests for outputting optional segmentation file * saving for test push * versions updated, test data added * Update main.nf * fixed versions info, should report correctly now * small update to main.nf outputs formatting * Apply suggestions from code review * Update test_data.config * Apply suggestions from code review Co-authored-by: GCJMackenzie <gavin.mackenzie@nibsc.org> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-10-05 22:52:00 +01:00