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8 commits

Author SHA1 Message Date
tamara-hodgetts
13b8a16f4a
Add module get_chrom_sizes (#1063) 
* hifiasm copied from fastqc

* hifiasm tests init from fastqc

* meta.yml init; test.yml and main.nf for printing version

* Add hifiasm version printing

* Removed spaced on an empty line

* Reverted hifiasm from main

* init getchromsizes

* add tests for getchromsizes

* Included meta.yml

* removed whitespace

* Moved getchromsizes to custom folder

* Update modules/custom/getchromsizes/main.nf

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

Co-authored-by: Sviatoslav Sidorov <sviatoslav.sidorov@crick.ac.uk>
Co-authored-by: Svyatoslav Sidorov <svet.sidorov@gmail.com>
Co-authored-by: Chris Cheshire <chris.j.cheshire@gmail.com>
Co-authored-by: Tamara Hodgetts <hodgett@crick.ac.uk>
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
 2021-11-15 19:22:12 +00:00
Kevin
3aacd46da2
Backfill software licenses meta (#876) 
* backfilled modules with meta.yml that had no license identifier

* harmonized BSD license names

* whitespace linting at modules/unzip/meta.yml:12

* harmonized software from US NIH-NCBI/NIST to 'US-Government-Work'

* Update modules/bcftools/index/meta.yml

`bcftools` is dual-licensed, use associative array to allow for multiple licenses

Co-authored-by: Michael L Heuer <heuermh@acm.org>

Co-authored-by: Michael L Heuer <heuermh@acm.org>
 2021-10-22 15:39:54 -07:00
Jose Espinosa-Carrasco
84f2302920
Correct parsing versions with trailing zeros (#795) 
* Correct parsing versions with trailing zeros

* Fix test

* Update modules/custom/dumpsoftwareversions/main.nf

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* Fix tests and go back to output versions.yml

* Update tests/test_versions_yml.py to use BaseLoader

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
Co-authored-by: Gregor Sturm <mail@gregor-sturm.de>
 2021-10-06 08:16:36 +02:00
Harshil Patel
49da864287
Update versions key in meta.yml for all modules (#787) 2021-10-03 08:20:26 +01:00
Harshil Patel
7b3315591a
Remove def software lines and emit versions channel as plural (#780) 
* Remove def software line

* Replace version with versions in emit statement

* Fix default software names
 2021-10-01 14:04:56 +01:00
Harshil Patel
22ec5c6007
Dump version for /custom/dumpsoftwareversions module itself (#764) 2021-09-30 09:00:33 +01:00
Harshil Patel
5a757b2981
Fix tyop in custom/dumpsoftwareversions (#762) 
* Add custom/dumpsoftwareversions modules for nf-core pipeline template

* Remove md5sums due to differing NF versions

* Fix tyop in custom/dumpsoftwareversions
 2021-09-29 14:35:43 +01:00
Harshil Patel
b2c2d4deb4
Add custom/dumpsoftwareversions modules for nf-core pipeline template (#761) 
* Add custom/dumpsoftwareversions modules for nf-core pipeline template

* Remove md5sums due to differing NF versions
 2021-09-29 14:27:00 +01:00