Harshil Patel
b3278a1e63
Modules TLC ( #551 )
...
* Modules TLC
* Fix all the tests
2021-07-01 16:13:01 +01:00
Jose Espinosa-Carrasco
95e02f913f
Update comments with new style ( #497 )
...
* Update comment style on functions.nf files
* Update test main.nf comments
* Add meta for ggread
2021-05-12 14:56:46 +01:00
Yuk Kei Wan
6ad50f8ec4
Add stringtie merge module (from nanoseq modules) ( #475 )
...
* add stringtie merge module
* add md5sum and path for stringtie.merged.gtf
* fix errors
* try fixing stringtie check error
* add tag
* remove unreproducible md5sum
* address PR suggestions
* hopefully fix linting error
2021-05-03 07:18:51 +02:00
Harshil Patel
dce27b8102
Update functions.nf to be more flexible for publishing by meta keys ( #423 )
...
* Update functions.nf
* Replace saveAs line in module main script
* Add spacing for ECLint
2021-04-09 17:23:56 +01:00
Jose Espinosa-Carrasco
572abb00b3
Remove def from module options definition in main ( #270 )
...
* Remove def from module options definition in main
* Fix bismark_deduplicate tests
* Fix bwameth_align tests
* Fixing gatk4 conda tests ("=" instead of ':' in build id)
* Same as previous commit (Fix gatk4 test)
* Fix qualimap bamqc test (no md5 check for pngs)
* Fix seqkit split2 tests. Changed to new test data
* Fix samtools tests. Some were missing initOptions include
* Removing TOOL SUBTOOL template module since now it is included on tools repo
2021-03-15 12:16:43 +00:00
drpatelh
dcc580e4fb
Remove Conda build ids for all modules
2021-02-16 23:58:23 +00:00
drpatelh
2b9129b3f9
Change txt channel output
2021-02-09 23:09:22 +00:00
drpatelh
3ae4c51f42
various - add build to conda definition
2021-02-03 09:20:34 +00:00
Edmund Miller
d76638d6f8
style( #77 ): Fix editorconfig errors
2020-12-17 17:50:24 -06:00
drpatelh
047dbde0af
Add singularity containers for rnaseq pipeline modules
2020-12-13 23:41:53 +00:00
drpatelh
a3f46865ff
Remove Singularity image path
2020-11-12 14:55:16 +00:00
drpatelh
14525ed50d
Remove functions file
2020-10-14 18:29:50 +01:00
drpatelh
74f27803b4
Update stringtie version
2020-10-12 15:55:07 +01:00
drpatelh
cbf8329ffd
Add new modules
2020-09-10 16:09:54 +01:00
