Kevin Menden
043a7d1e3c
remove deprecated test tags ( #440 )
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* remove deprecated test tags
* fix bowtie, gatk4/applybsqr
* fix gatk4 baserecalibrator
* fixed shovill
* fixed yara/mapper
* fixed kallistobustools/ref paths
2021-04-13 18:03:09 +01:00
Harshil Patel
242fdb2f73
Version bumps and minor module updates ( #406 )
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* Version bumps and minor module updates
* Fix Pangolin tests
* Fix SPAdes tests
* stageAs @phue
2021-04-06 13:38:41 +01:00
Jose Espinosa-Carrasco
f8e428d690
Restructuring spades tests whith new test data sets + fixing spades tests ( #396 )
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* Restructuring with new test data sets + fixing tests
* Remove checkings for warning files
* Remove md5 check for test.gene_clusters.fa
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-04-01 20:31:23 +01:00
Robert A. Petit III
c9256616b9
update tests for new config ( #384 )
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* update tests for new config
* fix quast, update more
* more updates!
* more tests updated
* fix tests, added tabix gff3.gz
* Delete main.nf
Removing SPAdes from PR to avoid merge conflicts with https://github.com/nf-core/modules/pull/396
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-04-01 20:22:06 +01:00
Harshil Patel
acb1a12a56
Re-organise all test data ( #354 )
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* Re-organise all test data
* Fix ECLint
* Fix ECLint agaaainn
* Now is not the time EClint
2021-03-24 09:53:41 +00:00
Jose Espinosa-Carrasco
72e81d6e90
Add spades module ( #277 )
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* Add spades module
* Reorder gatk4 modules alphabetically
* Update software/spades/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-03-18 13:48:38 +00:00
