Phil Ewels
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45fb2ff4f4
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Remove verbose job names
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2020-07-11 13:45:08 +02:00 |
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Phil Ewels
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a547f27f21
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New GitHub Action to lint code style
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2020-07-11 13:41:31 +02:00 |
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Phil Ewels
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8b6065764e
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Merge branch 'master' into tcoffee_dev
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2020-07-11 13:12:17 +02:00 |
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Phil Ewels
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dce77ce3f1
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Merge branch 'master' of github.com:nf-core/modules
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2020-07-11 13:08:33 +02:00 |
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JoseEspinosa
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787bf44c62
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Name was fixed to tcoffee instead of FastQC (used as template)
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2020-03-06 16:35:02 +01:00 |
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Piotr Faba
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6fd86ad9e5
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2 tests
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2020-03-06 14:56:33 +00:00 |
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Piotr Faba
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fa134a1196
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fix path error
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2020-03-06 14:54:26 +00:00 |
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Piotr Faba
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2646e55e2b
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get test working
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2020-03-06 14:50:29 +00:00 |
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Piotr Faba
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660be04708
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fix test
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2020-03-06 14:41:37 +00:00 |
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Piotr Faba
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36cad50593
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test submodules checkout
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2020-03-06 14:38:49 +00:00 |
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Piotr Faba
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977a9b3ee8
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test fix
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2020-03-06 14:34:34 +00:00 |
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Phil Ewels
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c8ceddfe77
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Tidying, add samtools and trim_galore
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2020-03-06 14:33:48 +00:00 |
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Piotr Faba
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f33dd2d2e9
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add ci test
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2020-03-06 14:31:44 +00:00 |
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Phil Ewels
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198e9a85eb
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FastQC: add dockerfile and environment.yml
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2020-03-06 14:04:18 +00:00 |
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Phil Ewels
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b3cc751e78
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Build tool docker images: first attempt
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2020-03-06 11:54:09 +00:00 |
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JoseEspinosa
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bcc89c27ca
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Fixing command to run nxf
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2020-03-06 12:47:55 +01:00 |
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JoseEspinosa
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7fe0a936f6
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Fixing another typo on the yml for CI github actions
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2020-03-06 12:41:07 +01:00 |
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JoseEspinosa
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36c0c56fdd
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Fixing typo on the yml for CI github actions
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2020-03-06 12:38:21 +01:00 |
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JoseEspinosa
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5f9cf40f5a
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Changing publishDir to take params.outdir and modifying yml for github actions
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2020-03-06 12:23:23 +01:00 |
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JoseEspinosa
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5de4c86bac
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symlink working? (github actions error)
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2020-03-06 12:02:40 +01:00 |
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JoseEspinosa
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4312ddc1fe
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Is the file in the submodule? (github actions error)
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2020-03-06 11:46:37 +01:00 |
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JoseEspinosa
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c8c2d0e659
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Trying to fix git actions
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2020-03-05 17:48:10 +01:00 |
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JoseEspinosa
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707d2855d6
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Adding tcoffee module
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2020-03-05 17:18:35 +01:00 |
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JoseEspinosa
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17ccbce67b
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Update test-datasets with msa data
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2020-03-05 17:17:14 +01:00 |
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Phil Ewels
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93f7b26aa2
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Use submodules for test data
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2019-12-06 09:24:33 +01:00 |
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Phil Ewels
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51bd2c0277
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Ansi log false for tests
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2019-12-05 22:20:02 +01:00 |
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Phil Ewels
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ef486a908b
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Use empty dict instead for workflow
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2019-12-05 16:09:28 +01:00 |
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Phil Ewels
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d682c6f7a8
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Workflows: test everything on paths
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2019-12-05 16:08:12 +01:00 |
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Phil Ewels
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a065ac3532
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Actions: install nextflow
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2019-12-05 16:03:00 +01:00 |
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Phil Ewels
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acc4eb0054
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GitHub actions - run nextflow in a docker image
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2019-12-05 15:57:32 +01:00 |
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Phil Ewels
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af766a9cc7
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Added TrimGalore
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2019-12-05 15:53:38 +01:00 |
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Phil Ewels
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497573fc5d
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Refactor GitHub actions workflows
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2019-12-05 15:44:10 +01:00 |
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Phil Ewels
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8837c2b81d
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GitHub actions: paths, not path
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2019-12-05 15:39:01 +01:00 |
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Phil Ewels
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97fbd32644
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Added samtools sort + index
Added container to FastQC
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2019-12-05 15:36:35 +01:00 |
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Phil Ewels
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5e4c023edd
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Start work on FastQC module files
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2019-12-05 15:18:09 +01:00 |
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Phil Ewels
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4582ab344c
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Add GitHub Actions, put FastQC in to a directory
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2019-12-05 14:52:43 +01:00 |
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