11 commits

Author	SHA1	Message	Date
Harshil Patel	dce27b8102	Update functions.nf to be more flexible for publishing by meta keys (#423) ... * Update functions.nf * Replace saveAs line in module main script * Add spacing for ECLint	2021-04-09 17:23:56 +01:00
Harshil Patel	242fdb2f73	Version bumps and minor module updates (#406) ... * Version bumps and minor module updates * Fix Pangolin tests * Fix SPAdes tests * stageAs @phue	2021-04-06 13:38:41 +01:00
Jose Espinosa-Carrasco	572abb00b3	Remove def from module options definition in main (#270) ... * Remove def from module options definition in main * Fix bismark_deduplicate tests * Fix bwameth_align tests * Fixing gatk4 conda tests ("=" instead of ':' in build id) * Same as previous commit (Fix gatk4 test) * Fix qualimap bamqc test (no md5 check for pngs) * Fix seqkit split2 tests. Changed to new test data * Fix samtools tests. Some were missing initOptions include * Removing TOOL SUBTOOL template module since now it is included on tools repo	2021-03-15 12:16:43 +00:00
Kevin Menden	0218824b86	add task.cpus to pangolin (#263) ... * add task.cpus to pangolin * bumped pangolin to v2.3.2	2021-03-10 09:02:23 +01:00
drpatelh	dcc580e4fb	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00
drpatelh	e63279e6a2	Pin pangoLearn version	2021-02-10 10:28:27 +00:00
drpatelh	6795fe04b8	Rename output channel	2021-02-09 23:26:18 +00:00
drpatelh	c0926b0b6b	various - add build to conda definition	2021-02-03 09:19:46 +00:00
Harshil Patel	59e3e8202b	Update software/pangolin/main.nf	2021-01-29 11:43:42 +00:00
Kevin Menden	8f2f936cd4	Apply suggestions from code review ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-01-29 12:33:37 +01:00
kevinmenden	69a41cadbc	added pangolin module	2021-01-29 11:03:54 +01:00