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2 commits

Author SHA1 Message Date
Daniel Lundin
885e724e07
Add postprocessing option to hmmer/eslreformat (#2061)
* Add postprocessing option to hmmer/eslreformat

* Update tests/modules/hmmer/eslreformat/nextflow.config

Co-authored-by: Daniel Straub <42973691+d4straub@users.noreply.github.com>

* Update modules/hmmer/eslreformat/main.nf

Co-authored-by: Daniel Straub <42973691+d4straub@users.noreply.github.com>

Co-authored-by: Daniel Straub <42973691+d4straub@users.noreply.github.com>
2022-09-14 18:43:50 +02:00
Daniel Lundin
8bc5236371
Add hmmer/eslreformat (#2009)
* Created hmmer/eslalimask from template

* esl-alimask module with --rf-is-mask test case

* Add optional file output

* Add hmmer to test name

* Move from process_single to process_low

* Test for versions.yml, plus content

* Prettier

* Avoid gzipping input alignment

* hmmer/eslreformat from template

* Started on main.nf

* meta.id to prefix

* Continued work

* Fix version string so it's from *this* tool

* hmmer/eslreformat

* Prettier

* Get tests/config/pytest_modules.yml back

* Delete extra hmmer/eslalimask in pytest_modules.yml

* More prettier

* Fix path to versions.yml in test

* Remove 'format' param

* Fix problems with format param deletion

* Document format param
2022-09-05 15:21:09 +02:00