Kevin Menden
043a7d1e3c
remove deprecated test tags ( #440 )
...
* remove deprecated test tags
* fix bowtie, gatk4/applybsqr
* fix gatk4 baserecalibrator
* fixed shovill
* fixed yara/mapper
* fixed kallistobustools/ref paths
2021-04-13 18:03:09 +01:00
Edmund Miller
a3684d9594
Lint modules ci ( #389 )
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* ci: Add modules lint step
Moved it ahead of the nextflow install so ideally it'll fail before we
bother doing any more setup
* ci: _ => /
* Update tests/config/pytest_software.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-04-08 09:10:52 +01:00
Harshil Patel
acb1a12a56
Re-organise all test data ( #354 )
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* Re-organise all test data
* Fix ECLint
* Fix ECLint agaaainn
* Now is not the time EClint
2021-03-24 09:53:41 +00:00
Robert A. Petit III
3f14b1fabe
Update shovill module ( #337 )
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* add shovill module
* removed deprecated shovill module
* fix line ending in functions.nf
* fix yaml indentation
* reduce spades memory usage
* update md5sums
* remove non reproducible md5sum
* Update test.yml
Remove last non-reproducible md5sum.
* purely cosmetic order change
* proper process label, improve output readability
Co-authored-by: Florian Wuennemann <flowuenne@gmail.com>
2021-03-24 04:57:41 +00:00
