Gregor Sturm
906577873b
Bulk update modules to use versions.yml ( #739 )
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* New functions.nf
* Convert code to create versions.yml
* Update meta.yml
* update output channel
* Fix more meta.yml
* Manually update remaining modules
* remove superflous echo
* Fix misformatted meta.yml files
* Fix yaml, was list instead of dict
* fix version for bcftools
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-09-27 09:41:24 +01:00
James A. Fellows Yates
ab93a1afa7
update: BWA/ALN ( #653 )
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* Specify more guidelines on input channels
* Linting
* Updates based on code review
* Update README.md
* Fix broken sentence
* Remove reads from output channel following module guidelines. Should do a .join() based on $meta, to reassociate.
Co-authored-by: Gregor Sturm <mail@gregor-sturm.de>
2021-08-17 15:55:54 +02:00
James A. Fellows Yates
45dee96bdf
module: bwa/aln ( #624 )
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* Specify more guidelines on input channels
* Linting
* Updates based on code review
* Update README.md
* Fix broken sentence
* Add bwa/aln module
* Also output reads as required with SAI
* fix container paths
* Sync bwa version samese/sampe
* Apply suggestions from code review
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-07-27 08:13:48 +01:00
