James A. Fellows Yates
a0443e2c54
Fixes incorrectly quoted tags ( #2113 )
...
* Update main.nf
* Update meta.yml
* Re-add logos as not staged in a way that works with MultiQC config files
* Update main.nf
* Remove now unnecessary input channel
* Remove unused channel from tests
* Update hAMRonization to 1.1.1 and add hAMRonization farGene
* Fix hamronizatio ntests
* Prettier
* Fix fargene linting
* Correct file
* Fix fargene output
* Apply suggestions from code review
Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com>
* Fix summarise tests
* Prettier
* Fix incorrect quotes in tags
Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com>
2022-09-27 20:37:56 +01:00
Mahesh Binzer-Panchal
233fa70811
Update manual versioning ( #1813 )
2022-06-27 10:35:41 +02:00
Matthias Hörtenhuber
e745e167c1
Fix formatting in yaml files, add yamllint config ( #1279 )
...
* fix yml formatting
* allow fastq.gz and fq.gz as file input, add meta.yml and test
* fix yaml files
* Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test"
This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4.
* prettier magic!
* fix comments for yamllint
* remove node version number
* fix linting errors
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2022-02-15 11:15:27 +00:00
Mahesh Binzer-Panchal
e20e57f90b
Add when: block ( #1261 )
2022-02-04 09:53:32 +01:00
Harshil Patel
67571c4e79
Add RSeqC tin.py module ( #1174 )
...
* Add RSeqC tin.py module
* Fix EC lint for unrelated hmmcopy module
* Remove md5sum for empty file
2021-12-15 21:26:43 +00:00
Simon Pearce
ae92159762
New subtool: hmmcopy/generatemap ( #1168 )
...
* Initial structure
* Working with local singularity image
* Working generateMap.pl script
* Remote not working bioconda
* Working generateMap with biocontainer
* Lint changes
* Updated hmmcopy container version to be consistent
* Fix failing test
* Remove path to perl
* No hardpath to script
* Update main.nf
Moved version outside of process, add support for zipped fasta file
* Revert to not allowing gzip via pipe, as perl script can't cope
Co-authored-by: Simon Pearce <simon.pearce@cruk.manchester.ac.uk>
2021-12-15 16:57:42 +01:00
