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2 commits

Author SHA1 Message Date
FriederikeHanssen
50eafb19c6
Update version for log4j vulnerability (#1176) 
* Update version for log4j vulnerability

* update checksums

* update checksums

* update checksums

* Remove todo string

* remove werid output paths

* remove werid output paths

* remove werid output paths

* Update various checksums

* Update various checksums

* Remove unstable md5sums

* Update md5sums

* Fix pileupsummary

* Fix genotypegvcfs

* Update test files mutect2

* hm genotypevcf updated again

* Update some mutect checksums and whatnot

* Fix last mutect checksum

* Apply suggestion to use mtochondria data instead
 2021-12-20 17:10:49 +01:00
FriederikeHanssen
a9dd46f010
add gatk4/gatherbqsr (#1130) 
* nf-core modules create

* add module files

* indent

* remove templte code

* manually revert pytest changes from tools

* manually revert pytest changes from tools

* add include statement back in

Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>
 2021-12-08 23:43:36 +01:00