Jose Espinosa-Carrasco
572abb00b3
Remove def from module options definition in main ( #270 )
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* Remove def from module options definition in main
* Fix bismark_deduplicate tests
* Fix bwameth_align tests
* Fixing gatk4 conda tests ("=" instead of ':' in build id)
* Same as previous commit (Fix gatk4 test)
* Fix qualimap bamqc test (no md5 check for pngs)
* Fix seqkit split2 tests. Changed to new test data
* Fix samtools tests. Some were missing initOptions include
* Removing TOOL SUBTOOL template module since now it is included on tools repo
2021-03-15 12:16:43 +00:00
drpatelh
dcc580e4fb
Remove Conda build ids for all modules
2021-02-16 23:58:23 +00:00
drpatelh
f3b5af4ed5
Fix bedtools slip module
2021-02-07 21:32:20 +00:00
sruthipsuresh
e360617ac6
Fixed images, genomecov
2021-01-29 23:17:44 -06:00
sruthipsuresh
e3bbbb48fc
Fixed slop file
2021-01-29 23:17:44 -06:00
sruthipsuresh
fc8cdde2b4
Apply suggestions from code review
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Add all initial suggestions from review (syntax issues)
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-01-29 23:17:44 -06:00
sruthipsuresh
70de0331a5
Corrected pytest and config
2021-01-29 23:17:44 -06:00
sruthipsuresh
672f94f2af
rebased and updated all bedtools testing and modules
2021-01-29 23:17:44 -06:00
Sruthi Suresh
89e5473b44
Updated modules with the changed container format
2021-01-29 23:17:44 -06:00
Sruthi Suresh
6677c98b11
Updated complement and completed slop module with all parameters available.
2021-01-29 23:17:44 -06:00
Sruthi Suresh
709970e9af
Completed slop module for modules with test directory and updated meta.yml file
2021-01-29 23:17:44 -06:00
Sruthi Suresh
1426d89440
Completed sloprefseq and removegenes modules (main.nf, meta.yml and functiosn.nf file). Also added the test directory with input/output/main.nf files.
2021-01-29 23:17:44 -06:00
