Edmund Miller
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e2ba70ed9a
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Add Cell Ranger mkfastq, mkgtf, and count (#979)
* feat(cellranger): Add initial count module
Co-authored-by: Gisela Gabernet <gisela.gabernet@gmail.com>
* feat(cellranger): Add mkgtf module
* test(cellranger): Fix count test with mkgtf
* fix(cellranger): Generalize gtf attribute filters
* chore: Add .gitignore for cellranger tar
* build(cellranger): Update dockerfile
https://joshtronic.com/2021/09/12/fixed-repository-debian-security-buster-updates-changed-suite-from-stable-to-oldstable/
* Apply suggestions from code review
Co-authored-by: Gisela Gabernet <gisela.gabernet@gmail.com>
* Apply suggestions from code review
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Update modules/cellranger/mkgtf/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* style: Capitalize README
* test(cellranger): Update pytest_modules
* feat(cellranger): Add initial mkfastq module
* ci: Update pytest modules
* refactor(cellranger): Update modules to new syntax
* docs(cellranger): Update meta files
There is some terrible copy-pasting going on.
* fix(cellranger): Add args
Co-authored-by: Gisela Gabernet <gisela.gabernet@gmail.com>
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-12-02 14:27:20 +00:00 |
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