Commit graph

2267 commits

Author SHA1 Message Date
drpatelh
953256f967 Reformat paired-end fastqs 2020-08-07 13:46:23 +01:00
Harshil Patel
347bbcc609
Merge pull request #62 from drpatelh/master
Add docs and test data for BWA mem
2020-08-07 13:29:56 +01:00
drpatelh
0ad26e3b19 Add output files 2020-08-07 13:28:18 +01:00
drpatelh
d10878f19d Change to SE 2020-08-07 13:27:06 +01:00
drpatelh
0cbefde4b0 Add index test data for BWA 2020-08-07 13:25:02 +01:00
drpatelh
7ab1245eb5 Add test data 2020-08-07 13:24:39 +01:00
drpatelh
b5338efb7d Add tests for BWA mem 2020-08-07 13:24:24 +01:00
Harshil Patel
efce3024de
Merge pull request #61 from drpatelh/master
Add docs and tests for BWA index
2020-08-07 13:01:10 +01:00
drpatelh
cff81ef875 Add test data 2020-08-07 12:57:32 +01:00
drpatelh
7604bd27fc Add test nextflow.config 2020-08-07 12:56:52 +01:00
drpatelh
f367f9ef69 Add main test script 2020-08-07 12:56:39 +01:00
drpatelh
375af1428e Minor change 2020-08-07 12:38:10 +01:00
drpatelh
a6fc702c8b Update bwa index docs 2020-08-07 12:38:01 +01:00
Harshil Patel
ad4151703f
Merge pull request #60 from drpatelh/master
Add docs and tests for TrimGalore!
2020-08-07 12:27:43 +01:00
drpatelh
9f4192d433 Add TrimGalore GitHub Actions test 2020-08-07 12:21:47 +01:00
drpatelh
36f2544c36 Add single_end input file for testing 2020-08-07 12:19:47 +01:00
drpatelh
6522b04ee3 Remove old code 2020-08-07 12:19:28 +01:00
drpatelh
30256d8e81 Update tests 2020-08-07 12:18:53 +01:00
drpatelh
2c0f552908 Add output files 2020-08-07 12:18:43 +01:00
drpatelh
4df72f0396 Update nextflow.config 2020-08-07 12:14:12 +01:00
drpatelh
f32950d0f2 Update docs for trimgalore 2020-08-07 12:10:42 +01:00
Harshil Patel
7c900e2d17
Merge pull request #59 from drpatelh/master
Refine module TEMPLATE
2020-08-07 11:41:56 +01:00
drpatelh
a63897ee9c Add input output test folders 2020-08-07 11:40:51 +01:00
drpatelh
d63982b41e Update README 2020-08-07 11:38:48 +01:00
drpatelh
3a4fbf36ae Add test 2020-08-07 11:31:07 +01:00
drpatelh
b1381bb577 Add TODOs 2020-08-07 11:30:55 +01:00
drpatelh
fee1687215 Add template example to README 2020-08-07 11:30:43 +01:00
drpatelh
e657363900 Add nextflow config to folder 2020-08-07 10:59:05 +01:00
drpatelh
bdfe187440 Add TODO comments 2020-08-07 10:58:36 +01:00
drpatelh
9296897009 Define options as input 2020-08-07 10:58:24 +01:00
Harshil Patel
5af5fc395e
Merge pull request #58 from drpatelh/master
Get tests working for FastQC
2020-08-07 10:11:53 +01:00
drpatelh
6255d9b00c Fix markdownlint 2020-08-07 10:10:12 +01:00
drpatelh
49e37cb22c Add profile docker 2020-08-07 10:07:20 +01:00
drpatelh
4f76bb6b03 Add nextflow.config 2020-08-07 10:06:45 +01:00
drpatelh
7efd46b489 Add nextflow.config 2020-08-07 09:59:19 +01:00
drpatelh
fab020461b Add -with-docker 2020-08-07 09:44:16 +01:00
drpatelh
111b1505fa Add basedir 2020-08-07 09:40:02 +01:00
drpatelh
75e7e1573c Add output files 2020-08-07 09:32:28 +01:00
drpatelh
754fad7c8e Update output paths 2020-08-07 09:32:03 +01:00
drpatelh
268c56c20d Update README 2020-08-07 09:31:54 +01:00
drpatelh
b0abd14135 Update tests 2020-08-07 09:31:27 +01:00
drpatelh
0466d5249b Update docs 2020-08-07 00:50:49 +01:00
drpatelh
cb08a7326a Change NF version 2020-08-07 00:38:56 +01:00
drpatelh
f014e67de6 Remove old outputs 2020-08-07 00:37:13 +01:00
drpatelh
2c7abca088 Move unit tests to deprecated 2020-08-07 00:36:05 +01:00
drpatelh
16d3ad5d06 Adapt script for meta 2020-08-07 00:35:34 +01:00
Harshil Patel
526ad8a457
Merge pull request #56 from drpatelh/master
Final README updates
2020-08-06 16:33:33 +01:00
drpatelh
a0ca7b1738 Update meta.yml link 2020-08-06 16:30:32 +01:00
drpatelh
c98b32dfa8 Add link to functions file 2020-08-06 16:26:57 +01:00
drpatelh
70607cf5e2 Adjust spacing 2020-08-06 16:19:31 +01:00