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Author SHA1 Message Date
praveenraj2018
598ca152ec
Intervallisttools (#491)
* added intervallisttools module

* add intervallisttools module

* arguments are now supplied using options.args

* removed java heapsize settings

* changes in main.nf and it is tested

* comment added

* Update software/gatk4/intervallisttools/meta.yml

Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>

* Update tests/software/gatk4/intervallisttools/test.yml

Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>

* review comment on tags in bedtointerval

* modified the test to get input from bedtointerval module

* Update software/gatk4/intervallisttools/meta.yml

* Apply suggestions from code review

Co-authored-by: Kevin Menden <kevin.menden@live.com>

* Apply suggestions from code review

* Update tests/config/pytest_software.yml

Co-authored-by: Kevin Menden <kevin.menden@live.com>

* Apply suggestions from code review

* Apply suggestions from code review

Co-authored-by: @praveenraj2018 <praveen.raj.somarajan@ki.se>
Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
Co-authored-by: Kevin Menden <kevin.menden@live.com>
2021-05-12 11:44:36 +02:00