Anthony Underwood
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6927f1d086
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New Snpsites module (#416)
* new gubbins module
* new gubbins module
* new gubbins module
* Update software/gubbins/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Update software/gubbins/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Update software/gubbins/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Update software/gubbins/meta.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* new gubbins module
* new gubbins module
* new gubbins module
* new gubbins module
* new gubbins module
* new gubbins module
* new gubbins module
* Update tests/config/test_data.config
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Update tests/software/gubbins/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* new gubbins module
* new gubbins module
* new snpsites module
* new snpsites module
* new snpsites module
* new snpsites module
* adding fasttree module
* correct trailing whitespace
* using sarscov2 as a test dir
* use sars-cov-2 alignment
* remove old test alignment
* new snpsites module
* new snpsites module
* new snpsites module
* updated test file names
* new snpsites module
* revert to gubbins test on upstream
* add new lines
* renove whitespace
* Apply suggestions from code review
Co-authored-by: avantonder <avt@sanger.ac.uk>
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
Co-authored-by: avantonder <ajv37@cam.ac.uk>
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2021-04-09 08:00:33 +01:00 |
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