6 commits

Author	SHA1	Message	Date
Edmund Miller	a3684d9594	Lint modules ci (#389) ... * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-04-08 09:10:52 +01:00
Mark-S-Hill	889465cb2b	update test data paths (#373) ... * update test data paths * Update test md5sums * gatk test fixes & update variantfiltration main * few extra fixes after review * fix suspected format error * Update software/gatk4/variantfiltration/main.nf * Update software/gatk4/variantfiltration/main.nf * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-03-24 18:14:11 +00:00
Harshil Patel	acb1a12a56	Re-organise all test data (#354) ... * Re-organise all test data * Fix ECLint * Fix ECLint agaaainn * Now is not the time EClint	2021-03-24 09:53:41 +00:00
Kevin Menden	a552d97849	Exchange VCF data by sarscov2 data (#261) ... * added sarscov2 vcf data; adjusted bcftools tests * updated README.md * deleted old VCF files; fixed mergevcfs * fixed tabix	2021-03-09 10:04:08 +01:00
JoseEspinosa	e9d90007c5	Adding arguments to make md5 hashes stable	2021-02-23 19:39:24 +01:00
JoseEspinosa	4b3c86ed9f	Add tests for bcftools-mpileup	2021-02-23 19:05:57 +01:00