Maxime U. Garcia
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4f5274c3de
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feat: remove read_group which should be set up with task.ext.args (#1521)
* feat: remove reat_group which should be set up with ext.args
* fix: simplify dragmap command
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2022-04-13 14:30:34 +02:00 |
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FriederikeHanssen
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897c33d5da
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Samtools version update (#1507)
* Fix typo
* update version to 1.15.1
* Fix md5sums
* update mulled containers
* update md5sums
* update md5sums
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2022-04-11 14:26:28 +02:00 |
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Maxime U. Garcia
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e786457fb0
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feat: add readgroup info + reorder samtools command line to mimic bwamem (#1447)
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2022-03-25 11:26:47 +01:00 |
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Matthias Hörtenhuber
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e745e167c1
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Fix formatting in yaml files, add yamllint config (#1279)
* fix yml formatting
* allow fastq.gz and fq.gz as file input, add meta.yml and test
* fix yaml files
* Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test"
This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4.
* prettier magic!
* fix comments for yamllint
* remove node version number
* fix linting errors
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2022-02-15 11:15:27 +00:00 |
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Mahesh Binzer-Panchal
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e20e57f90b
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Add when: block (#1261)
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2022-02-04 09:53:32 +01:00 |
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Maxime U. Garcia
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ca3ae9ff4f
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feat: update dragmap to follow new bwa/mem + bwamem2/mem logic (#1146)
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2021-12-08 23:19:37 +01:00 |
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Edmund Miller
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f3ffa69b8d
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Dragmap (#1108)
* feat(dragmap): Add initial hastable module
* feat(dragmap): Add initial align module
* test(dragmap): Remove md5sum
Forgot sam files have a header. Might pipe this through samtools.
* build(dragmap): Add mulled container
* chore(dragmap): Update prefix
* feat(dragmap): Output a bam file
* feat(dragmap): Add log files
* Update modules/dragmap/align/meta.yml
Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com>
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2021-12-06 09:56:41 +01:00 |
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