Commit graph

2 commits

Author SHA1 Message Date
Alexander Ramos Díaz
9d5ad1894b
2012 bug related to species input in goattaxonsearch module (#2099)
* updated input for taxon

* updated test_single_species

* updated test file

* run prettier on test.yml

* updated label process_low

* restored lable process_single

Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk>
2022-09-23 10:58:40 -06:00
Alexander Ramos Díaz
37c6d4a1a1
Add module: goat/taxonsearch (#1866)
* first commit

* single taxon input

* added .tsv output

* input: single taxon or file with taxon identifiers

* updated input and output

* removed wrong tool description

* added tests

* ext.args = '-l -b'

* fixed wrong input names

* updated test file

* Update modules/goat/taxonsearch/main.nf

simple version output

Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk>

* removed 'NO_FILE' from input definition

* added ! in if statement

* optional input: empty list

* successful updated test

* added test with file

* remove blank spaces in include {}

* added test with taxa file

Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk>
2022-08-18 08:34:58 -06:00