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2 commits

Author SHA1 Message Date
Ashot Margaryan
d8ba32c6b5
Somalier relate (#2001)
* Working version of somalier relate

* few changes

* new changes

* corrected test.yml

* updated container paths and file paths

* changed container and inputFile paths

* changed left padding

* requested changes

* Update modules/somalier/relate/main.nf

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>

* Update modules/somalier/relate/main.nf

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>

* Update modules/somalier/relate/main.nf

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>

* Update modules/somalier/relate/main.nf

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>

* Update modules/somalier/relate/meta.yml

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>

* Update modules/somalier/relate/meta.yml

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>

* Update modules/somalier/relate/meta.yml

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>

* requested changes

* requested changes

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-09-19 13:22:24 +02:00
Ashot Margaryan
f62e4cf5f0
Added Somalier extract module (#1986)
* Added Somalier extract module

* changed somalier_dbg4 to somalier for versions.yml

* added  and minor changes in meta.yml

* Apply suggestions from code review

* Update main.nf

* Typo in quay.io rl

* updated the input

* new updates

* linting

* linting

* changed the test.yml

* Update modules/somalier/extract/main.nf

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>

* Update modules/somalier/extract/main.nf

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>

* Update modules/somalier/extract/meta.yml

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>

* Update modules/somalier/extract/main.nf

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>

* Update tests/modules/somalier/extract/main.nf

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>

* Update modules/somalier/extract/main.nf

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>

* Update tests/modules/somalier/extract/test.yml

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>

* last changes

* Update modules/somalier/extract/meta.yml

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>

* Update modules/somalier/extract/meta.yml

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>

* Update modules/somalier/extract/main.nf

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-09-19 08:58:17 +02:00