Harshil Patel
7b3315591a
Remove def software lines and emit versions channel as plural ( #780 )
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* Remove def software line
* Replace version with versions in emit statement
* Fix default software names
2021-10-01 14:04:56 +01:00
Gregor Sturm
906577873b
Bulk update modules to use versions.yml ( #739 )
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* New functions.nf
* Convert code to create versions.yml
* Update meta.yml
* update output channel
* Fix more meta.yml
* Manually update remaining modules
* remove superflous echo
* Fix misformatted meta.yml files
* Fix yaml, was list instead of dict
* fix version for bcftools
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-09-27 09:41:24 +01:00
James A. Fellows Yates
561f16fe74
update: MALT build version bump ( #699 )
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* Specify more guidelines on input channels
* Linting
* Updates based on code review
* Update README.md
* Fix broken sentence
* Bump versions
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-09-15 16:46:29 +01:00
James A. Fellows Yates
26fc617983
Update: MALT_RUN ( #706 )
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* Specify more guidelines on input channels
* Linting
* Updates based on code review
* Update README.md
* Fix broken sentence
* Bump MALT versions for MALT-run
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-09-15 16:37:46 +01:00
James A. Fellows Yates
292e8eceb9
module: MALT/RUN ( #646 )
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* Specify more guidelines on input channels
* Linting
* Updates based on code review
* Update README.md
* Fix broken sentence
* Add MALT with incomplete tests
* Parameter typo fix
* Clean up test yaml
* Finish MALT module prior UNZIP and MALT_BUILD modiules
* Add required modules for tests
* Sync test out with malt-build
* Fix input parameters in tests based on final build module
* Update modules/malt/run/meta.yml
Co-authored-by: Gregor Sturm <mail@gregor-sturm.de>
Co-authored-by: Gregor Sturm <mail@gregor-sturm.de>
2021-08-04 11:06:08 +02:00
James A. Fellows Yates
6913da9d2d
module: MALT/BUILD ( #645 )
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* Specify more guidelines on input channels
* Linting
* Updates based on code review
* Update README.md
* Fix broken sentence
* Start MALT-build
* Start MALT build (missing meta files and outputs specS)
* Local tests
* Correct test map_type
* Finished module, just waiting for UNZIP module to finalise tests
* Correct tests in preparation for Unzip
* Ouptut log file too
* Update meta.yml
* Rename log file
* Rename log file
* Remove debugging stuff
* Add Unzip module
* Linting update
* Linting update
* Fix input db
* Fix db file in cmd
* Update modules/malt/build/main.nf
* Update modules/malt/build/main.nf
* Update main.nf
2021-08-03 16:24:19 +02:00
