4 commits

Author	SHA1	Message	Date
Harshil Patel	7b3315591a	Remove def software lines and emit versions channel as plural (#780) ... * Remove def software line * Replace version with versions in emit statement * Fix default software names	2021-10-01 14:04:56 +01:00
Gregor Sturm	906577873b	Bulk update modules to use versions.yml (#739) ... * New functions.nf * Convert code to create versions.yml * Update meta.yml * update output channel * Fix more meta.yml * Manually update remaining modules * remove superflous echo * Fix misformatted meta.yml files * Fix yaml, was list instead of dict * fix version for bcftools Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-09-27 09:41:24 +01:00
Jose Espinosa-Carrasco	217303f5c1	Add option -p to set the # of cpus on stringtie (#601) ... * Add option -p to set the # of cpus on stringtie * Bump version 2.1.7 to stringtie modules * Output stringtie/merge version * Fix padding * Apply suggestions from code review * Defining software variable * Fix test, gff can't be md5 check, contains instead Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-07-21 15:38:40 +02:00
Harshil Patel	e937c7950a	Rename software/ directory to modules/ to re-organise module structure (#567) ... * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml	2021-07-07 10:10:18 +01:00

Renamed from software/stringtie/merge/main.nf (Browse further)